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Sample GSM337692 Query DataSets for GSM337692
Status Public on Nov 14, 2008
Title HCC1954_TRIGS_G10
Sample type genomic
Source name human breast
Organism Homo sapiens
Characteristics breast ductal adenocarcinoma
Treatment protocol NA
Growth protocol Cell lines were propagated in growth media recommended by the American Type Tissue Collection
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted with the DNeasy blood and tissue kit (Qiagen) according to manufacturer's instructions
Label biotin
Label protocol Affymetrix standard procedure
Hybridization protocol Affymetrix standard procedure
Scan protocol Affymetrix standard procedure
Description TRIGS_p_TCGAaffxB5_sty_GenomeWideSNP_6_G10_223242
Data processing Copy numbers were estimated by a copy number pipeline according to The Cancer Genome Atlas Research Network (2008) Nature
Submission date Oct 27, 2008
Last update date Oct 29, 2008
Contact name Derek Chiang
Organization name University of North Carolina
Department Department of Genetics
Street address UNC Lineberger Cancer Center, 450 West Drive, CB #7295
City Chapel Hill
State/province NC
ZIP/Postal code 27599-7295
Country USA
Platform ID GPL6801
Series (2)
GSE13372 High-resolution mapping of copy-number alterations with massively parallel sequencing
GSE13373 Mapping of copy-number alterations with massively parallel sequencing

Data table header descriptions
VALUE copy number inferred after correction with the 5 closest normals

Data table
CN_473963 1.382
CN_473964 0.926
CN_473965 1.346
CN_477984 1.505
CN_473981 1.113
CN_473982 0.994
CN_497980 1.245
CN_497981 1.052
CN_513369 0.348
CN_513370 1.451
CN_517762 1.687
CN_517763 1.134
CN_502615 1.612
CN_502613 1.936
CN_502614 2.013
CN_502616 2.182
CN_502842 2.903
CN_502843 1.492
CN_466171 2.322
CN_466172 1.743

Total number of rows: 1851810

Table truncated, full table size 32793 Kbytes.

Supplementary file Size Download File type/resource
GSM337692.CEL.gz 29.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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