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Sample GSM337691 Query DataSets for GSM337691
Status Public on Nov 14, 2008
Title HCC1954_FALLS_G08
Sample type genomic
Source name human breast
Organism Homo sapiens
Characteristics breast ductal adenocarcinoma
Treatment protocol NA
Growth protocol Cell lines were propagated in growth media recommended by the American Type Tissue Collection
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted with the DNeasy blood and tissue kit (Qiagen) according to manufacturer's instructions
Label biotin
Label protocol Affymetrix standard procedure
Hybridization protocol Affymetrix standard procedure
Scan protocol Affymetrix standard procedure
Description FALLS_p_TCGAaffxB4_1_GenomeWideSNP_6_G08_190676
Data processing Copy numbers were estimated by a copy number pipeline according to The Cancer Genome Atlas Research Network (2008) Nature
Submission date Oct 27, 2008
Last update date Oct 29, 2008
Contact name Derek Chiang
Organization name University of North Carolina
Department Department of Genetics
Street address UNC Lineberger Cancer Center, 450 West Drive, CB #7295
City Chapel Hill
State/province NC
ZIP/Postal code 27599-7295
Country USA
Platform ID GPL6801
Series (2)
GSE13372 High-resolution mapping of copy-number alterations with massively parallel sequencing
GSE13373 Mapping of copy-number alterations with massively parallel sequencing

Data table header descriptions
VALUE copy number inferred after correction with the 5 closest normals

Data table
CN_473963 5.658
CN_473964 1.024
CN_473965 1.127
CN_477984 2.019
CN_473981 2.364
CN_473982 1.002
CN_497980 2.091
CN_497981 1.379
CN_513369 2.515
CN_513370 1.698
CN_517762 2.019
CN_517763 1.258
CN_502615 2.866
CN_502613 2.422
CN_502614 4.506
CN_502616 17.894
CN_502842 2.720
CN_502843 1.989
CN_466171 1.273
CN_466172 1.988

Total number of rows: 1851810

Table truncated, full table size 32634 Kbytes.

Supplementary file Size Download File type/resource
GSM337691.CEL.gz 23.7 Mb (ftp)(http) CEL
Processed data included within Sample table

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