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Sample GSM337690 Query DataSets for GSM337690
Status Public on Nov 14, 2008
Title HCC1954_GHATS_G09
Sample type genomic
Source name human breast
Organism Homo sapiens
Characteristics breast ductal adenocarcinoma
Treatment protocol NA
Growth protocol Cell lines were propagated in growth media recommended by the American Type Tissue Collection
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted with the DNeasy blood and tissue kit (Qiagen) according to manufacturer's instructions
Label biotin
Label protocol Affymetrix standard procedure
Hybridization protocol Affymetrix standard procedure
Scan protocol Affymetrix standard procedure
Description GHATS_p_TCGAaffx_B3_GBM_GenomeWideSNP_6_G09_160226
Data processing Copy numbers were estimated by a copy number pipeline according to The Cancer Genome Atlas Research Network (2008) Nature
Submission date Oct 27, 2008
Last update date Oct 29, 2008
Contact name Derek Chiang
Organization name University of North Carolina
Department Department of Genetics
Street address UNC Lineberger Cancer Center, 450 West Drive, CB #7295
City Chapel Hill
State/province NC
ZIP/Postal code 27599-7295
Country USA
Platform ID GPL6801
Series (2)
GSE13372 High-resolution mapping of copy-number alterations with massively parallel sequencing
GSE13373 Mapping of copy-number alterations with massively parallel sequencing

Data table header descriptions
VALUE copy number inferred after correction with the 5 closest normals

Data table
CN_473963 2.481
CN_473964 1.623
CN_473965 1.404
CN_477984 1.254
CN_473981 2.059
CN_473982 0.767
CN_497980 1.275
CN_497981 1.277
CN_513369 0.707
CN_513370 1.358
CN_517762 3.229
CN_517763 1.627
CN_502615 6.279
CN_502613 1.680
CN_502614 1.162
CN_502616 1.870
CN_502842 1.750
CN_502843 1.711
CN_466171 3.858
CN_466172 4.173

Total number of rows: 1851810

Table truncated, full table size 32803 Kbytes.

Supplementary file Size Download File type/resource
GSM337690.CEL.gz 30.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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