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Sample GSM337664 Query DataSets for GSM337664
Status Public on Nov 14, 2008
Title HCC1143BL_GLEYS_C11
Sample type genomic
Source name human peripheral blood
Organism Homo sapiens
Characteristics EBV-transformed lymphoblastoid cell line with gain of chromosome 4
Treatment protocol NA
Growth protocol Cell lines were propagated in growth media recommended by the American Type Tissue Collection
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted with the DNeasy blood and tissue kit (Qiagen) according to manufacturer's instructions
Label biotin
Label protocol Affymetrix standard procedure
Hybridization protocol Affymetrix standard procedure
Scan protocol Affymetrix standard procedure
Description GLEYS_p_6.0_Test_GenomeWideEx_6_C11_140890
Data processing Copy numbers were estimated by a copy number pipeline according to The Cancer Genome Atlas Research Network (2008) Nature
Submission date Oct 27, 2008
Last update date Oct 29, 2008
Contact name Derek Chiang
Organization name University of North Carolina
Department Department of Genetics
Street address UNC Lineberger Cancer Center, 450 West Drive, CB #7295
City Chapel Hill
State/province NC
ZIP/Postal code 27599-7295
Country USA
Platform ID GPL6801
Series (2)
GSE13372 High-resolution mapping of copy-number alterations with massively parallel sequencing
GSE13373 Mapping of copy-number alterations with massively parallel sequencing

Data table header descriptions
VALUE copy number inferred after correction with the 5 closest normals

Data table
CN_473963 2.602
CN_473964 1.637
CN_473965 1.687
CN_477984 2.389
CN_473981 9.311
CN_473982 1.578
CN_497980 1.951
CN_497981 1.381
CN_513369 1.298
CN_513370 1.744
CN_517762 2.010
CN_517763 1.329
CN_502615 0.993
CN_502613 1.319
CN_502614 2.414
CN_502616 1.910
CN_502842 2.200
CN_502843 2.272
CN_466171 2.504
CN_466172 1.826

Total number of rows: 1851810

Table truncated, full table size 32799 Kbytes.

Supplementary file Size Download File type/resource
GSM337664.CEL.gz 31.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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