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Sample GSM337663 Query DataSets for GSM337663
Status Public on Nov 14, 2008
Title HCC1143BL_GLEYS_C09
Sample type genomic
 
Source name human peripheral blood
Organism Homo sapiens
Characteristics EBV-transformed lymphoblastoid cell line with gain of chromosome 3
Treatment protocol NA
Growth protocol Cell lines were propagated in growth media recommended by the American Type Tissue Collection
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted with the DNeasy blood and tissue kit (Qiagen) according to manufacturer's instructions
Label biotin
Label protocol Affymetrix standard procedure
 
Hybridization protocol Affymetrix standard procedure
Scan protocol Affymetrix standard procedure
Description GLEYS_p_6.0_Test_GenomeWideEx_6_C09_140858
Data processing Copy numbers were estimated by a copy number pipeline according to The Cancer Genome Atlas Research Network (2008) Nature
 
Submission date Oct 27, 2008
Last update date Oct 29, 2008
Contact name Derek Chiang
E-mail(s) chiang@med.unc.edu
Organization name University of North Carolina
Department Department of Genetics
Street address UNC Lineberger Cancer Center, 450 West Drive, CB #7295
City Chapel Hill
State/province NC
ZIP/Postal code 27599-7295
Country USA
 
Platform ID GPL6801
Series (2)
GSE13372 High-resolution mapping of copy-number alterations with massively parallel sequencing
GSE13373 Mapping of copy-number alterations with massively parallel sequencing

Data table header descriptions
ID_REF
VALUE copy number inferred after correction with the 5 closest normals

Data table
ID_REF VALUE
CN_473963 2.406
CN_473964 1.409
CN_473965 1.811
CN_477984 2.165
CN_473981 1.602
CN_473982 1.879
CN_497980 1.900
CN_497981 1.691
CN_513369 0.875
CN_513370 1.546
CN_517762 1.988
CN_517763 1.819
CN_502615 2.061
CN_502613 0.980
CN_502614 1.350
CN_502616 1.110
CN_502842 1.740
CN_502843 2.019
CN_466171 1.281
CN_466172 2.138

Total number of rows: 1851810

Table truncated, full table size 32798 Kbytes.




Supplementary file Size Download File type/resource
GSM337663.CEL.gz 25.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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