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Sample GSM337658 Query DataSets for GSM337658
Status Public on Nov 14, 2008
Title HCC1143_STAIR_A01
Sample type genomic
 
Source name human breast
Organism Homo sapiens
Characteristics breast ductal adenocarcinoma
Treatment protocol NA
Growth protocol Cell lines were propagated in growth media recommended by the American Type Tissue Collection
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted with the DNeasy blood and tissue kit (Qiagen) according to manufacturer's instructions
Label biotin
Label protocol Affymetrix standard procedure
 
Hybridization protocol Affymetrix standard procedure
Scan protocol Affymetrix standard procedure
Description STAIR_p_TCGA_Batch7_Affx_N_GenomeWideSNP_6_A01_238354
Data processing Copy numbers were estimated by a copy number pipeline according to The Cancer Genome Atlas Research Network (2008) Nature
 
Submission date Oct 27, 2008
Last update date Oct 29, 2008
Contact name Derek Chiang
E-mail(s) chiang@med.unc.edu
Organization name University of North Carolina
Department Department of Genetics
Street address UNC Lineberger Cancer Center, 450 West Drive, CB #7295
City Chapel Hill
State/province NC
ZIP/Postal code 27599-7295
Country USA
 
Platform ID GPL6801
Series (2)
GSE13372 High-resolution mapping of copy-number alterations with massively parallel sequencing
GSE13373 Mapping of copy-number alterations with massively parallel sequencing

Data table header descriptions
ID_REF
VALUE copy number inferred after correction with the 5 closest normals

Data table
ID_REF VALUE
CN_473963 3.550
CN_473964 3.214
CN_473965 2.863
CN_477984 1.570
CN_473981 7.348
CN_473982 2.721
CN_497980 2.285
CN_497981 1.547
CN_513369 2.973
CN_513370 2.518
CN_517762 2.543
CN_517763 1.852
CN_502615 2.105
CN_502613 2.683
CN_502614 2.778
CN_502616 5.297
CN_502842 3.646
CN_502843 2.078
CN_466171 1.919
CN_466172 1.996

Total number of rows: 1851810

Table truncated, full table size 32803 Kbytes.




Supplementary file Size Download File type/resource
GSM337658.CEL.gz 31.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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