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Sample GSM337657 Query DataSets for GSM337657
Status Public on Nov 14, 2008
Title HCC1143_PUNAS_A02
Sample type genomic
 
Source name human breast
Organism Homo sapiens
Characteristics breast ductal adenocarcinoma
Treatment protocol NA
Growth protocol Cell lines were propagated in growth media recommended by the American Type Tissue Collection
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted with the DNeasy blood and tissue kit (Qiagen) according to manufacturer's instructions
Label biotin
Label protocol Affymetrix standard procedure
 
Hybridization protocol Affymetrix standard procedure
Scan protocol Affymetrix standard procedure
Description PUNAS_p_Kinome_misc_AFFX_n_GenomeWideSNP_6_A02_238164
Data processing Copy numbers were estimated by a copy number pipeline according to The Cancer Genome Atlas Research Network (2008) Nature
 
Submission date Oct 27, 2008
Last update date Oct 29, 2008
Contact name Derek Chiang
E-mail(s) chiang@med.unc.edu
Organization name University of North Carolina
Department Department of Genetics
Street address UNC Lineberger Cancer Center, 450 West Drive, CB #7295
City Chapel Hill
State/province NC
ZIP/Postal code 27599-7295
Country USA
 
Platform ID GPL6801
Series (2)
GSE13372 High-resolution mapping of copy-number alterations with massively parallel sequencing
GSE13373 Mapping of copy-number alterations with massively parallel sequencing

Data table header descriptions
ID_REF
VALUE copy number inferred after correction with the 5 closest normals

Data table
ID_REF VALUE
CN_473963 3.425
CN_473964 2.566
CN_473965 3.303
CN_477984 1.835
CN_473981 5.459
CN_473982 2.377
CN_497980 1.489
CN_497981 1.734
CN_513369 3.952
CN_513370 2.592
CN_517762 4.580
CN_517763 1.683
CN_502615 2.417
CN_502613 2.229
CN_502614 2.940
CN_502616 4.956
CN_502842 3.437
CN_502843 2.374
CN_466171 2.792
CN_466172 1.926

Total number of rows: 1851810

Table truncated, full table size 32803 Kbytes.




Supplementary file Size Download File type/resource
GSM337657.CEL.gz 32.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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