GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM337656 Query DataSets for GSM337656
Status Public on Nov 14, 2008
Title HCC1143_PUNAS_D06
Sample type genomic
Source name human breast
Organism Homo sapiens
Characteristics breast ductal adenocarcinoma
Treatment protocol NA
Growth protocol Cell lines were propagated in growth media recommended by the American Type Tissue Collection
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted with the DNeasy blood and tissue kit (Qiagen) according to manufacturer's instructions
Label biotin
Label protocol Affymetrix standard procedure
Hybridization protocol Affymetrix standard procedure
Scan protocol Affymetrix standard procedure
Description PUNAS_p_Kinome_misc_AFFX_n_GenomeWideSNP_6_D06_238244
Data processing Copy numbers were estimated by a copy number pipeline according to The Cancer Genome Atlas Research Network (2008) Nature
Submission date Oct 27, 2008
Last update date Oct 29, 2008
Contact name Derek Chiang
Organization name University of North Carolina
Department Department of Genetics
Street address UNC Lineberger Cancer Center, 450 West Drive, CB #7295
City Chapel Hill
State/province NC
ZIP/Postal code 27599-7295
Country USA
Platform ID GPL6801
Series (2)
GSE13372 High-resolution mapping of copy-number alterations with massively parallel sequencing
GSE13373 Mapping of copy-number alterations with massively parallel sequencing

Data table header descriptions
VALUE copy number inferred after correction with the 5 closest normals

Data table
CN_473963 4.441
CN_473964 3.233
CN_473965 2.845
CN_477984 1.200
CN_473981 6.294
CN_473982 2.787
CN_497980 2.091
CN_497981 1.634
CN_513369 5.180
CN_513370 2.428
CN_517762 4.256
CN_517763 1.641
CN_502615 3.361
CN_502613 2.692
CN_502614 4.062
CN_502616 3.902
CN_502842 2.313
CN_502843 2.017
CN_466171 3.244
CN_466172 1.913

Total number of rows: 1851810

Table truncated, full table size 32802 Kbytes.

Supplementary file Size Download File type/resource
GSM337656.CEL.gz 32.1 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap