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Sample GSM337655 Query DataSets for GSM337655
Status Public on Nov 14, 2008
Title HCC1143_SHUNT_A01
Sample type genomic
Source name human breast
Organism Homo sapiens
Characteristics breast ductal adenocarcinoma
Treatment protocol NA
Growth protocol Cell lines were propagated in growth media recommended by the American Type Tissue Collection
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted with the DNeasy blood and tissue kit (Qiagen) according to manufacturer's instructions
Label biotin
Label protocol Affymetrix standard procedure
Hybridization protocol Affymetrix standard procedure
Scan protocol Affymetrix standard procedure
Description SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_A01_228690
Data processing Copy numbers were estimated by a copy number pipeline according to The Cancer Genome Atlas Research Network (2008) Nature
Submission date Oct 27, 2008
Last update date Oct 29, 2008
Contact name Derek Chiang
Organization name University of North Carolina
Department Department of Genetics
Street address UNC Lineberger Cancer Center, 450 West Drive, CB #7295
City Chapel Hill
State/province NC
ZIP/Postal code 27599-7295
Country USA
Platform ID GPL6801
Series (2)
GSE13372 High-resolution mapping of copy-number alterations with massively parallel sequencing
GSE13373 Mapping of copy-number alterations with massively parallel sequencing

Data table header descriptions
VALUE copy number inferred after correction with the 5 closest normals

Data table
CN_473963 2.404
CN_473964 3.050
CN_473965 3.965
CN_477984 3.938
CN_473981 6.683
CN_473982 1.938
CN_497980 5.733
CN_497981 1.375
CN_513369 12.314
CN_513370 10.647
CN_517762 1.912
CN_517763 1.082
CN_502615 2.187
CN_502613 1.430
CN_502614 1.350
CN_502616 1.450
CN_502842 1.794
CN_502843 1.390
CN_466171 0.629
CN_466172 2.680

Total number of rows: 1851810

Table truncated, full table size 32855 Kbytes.

Supplementary file Size Download File type/resource
GSM337655.CEL.gz 30.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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