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Sample GSM337653 Query DataSets for GSM337653
Status Public on Nov 14, 2008
Title HCC1143_TRIGS_G08
Sample type genomic
Source name human breast
Organism Homo sapiens
Characteristics breast ductal adenocarcinoma
Treatment protocol NA
Growth protocol Cell lines were propagated in growth media recommended by the American Type Tissue Collection
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted with the DNeasy blood and tissue kit (Qiagen) according to manufacturer's instructions
Label biotin
Label protocol Affymetrix standard procedure
Hybridization protocol Affymetrix standard procedure
Scan protocol Affymetrix standard procedure
Description TRIGS_p_TCGAaffxB5_sty_GenomeWideSNP_6_G08_223210
Data processing Copy numbers were estimated by a copy number pipeline according to The Cancer Genome Atlas Research Network (2008) Nature
Submission date Oct 27, 2008
Last update date Oct 29, 2008
Contact name Derek Chiang
Organization name University of North Carolina
Department Department of Genetics
Street address UNC Lineberger Cancer Center, 450 West Drive, CB #7295
City Chapel Hill
State/province NC
ZIP/Postal code 27599-7295
Country USA
Platform ID GPL6801
Series (2)
GSE13372 High-resolution mapping of copy-number alterations with massively parallel sequencing
GSE13373 Mapping of copy-number alterations with massively parallel sequencing

Data table header descriptions
VALUE copy number inferred after correction with the 5 closest normals

Data table
CN_473963 3.355
CN_473964 2.194
CN_473965 2.776
CN_477984 1.714
CN_473981 5.000
CN_473982 1.849
CN_497980 1.674
CN_497981 0.878
CN_513369 2.692
CN_513370 2.006
CN_517762 2.607
CN_517763 1.465
CN_502615 3.264
CN_502613 1.942
CN_502614 2.350
CN_502616 2.931
CN_502842 2.561
CN_502843 2.105
CN_466171 2.036
CN_466172 2.046

Total number of rows: 1851810

Table truncated, full table size 32794 Kbytes.

Supplementary file Size Download File type/resource
GSM337653.CEL.gz 29.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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