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Sample GSM337651 Query DataSets for GSM337651
Status Public on Nov 14, 2008
Title HCC1143_FALLS_A02
Sample type genomic
Source name human breast
Organism Homo sapiens
Characteristics breast ductal adenocarcinoma
Treatment protocol NA
Growth protocol Cell lines were propagated in growth media recommended by the American Type Tissue Collection
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted with the DNeasy blood and tissue kit (Qiagen) according to manufacturer's instructions
Label biotin
Label protocol Affymetrix standard procedure
Hybridization protocol Affymetrix standard procedure
Scan protocol Affymetrix standard procedure
Description FALLS_p_TCGAaffxB4_1_GenomeWideSNP_6_A02_190520
Data processing Copy numbers were estimated by a copy number pipeline according to The Cancer Genome Atlas Research Network (2008) Nature
Submission date Oct 27, 2008
Last update date Oct 29, 2008
Contact name Derek Chiang
Organization name University of North Carolina
Department Department of Genetics
Street address UNC Lineberger Cancer Center, 450 West Drive, CB #7295
City Chapel Hill
State/province NC
ZIP/Postal code 27599-7295
Country USA
Platform ID GPL6801
Series (2)
GSE13372 High-resolution mapping of copy-number alterations with massively parallel sequencing
GSE13373 Mapping of copy-number alterations with massively parallel sequencing

Data table header descriptions
VALUE copy number inferred after correction with the 5 closest normals

Data table
CN_473963 4.315
CN_473964 1.847
CN_473965 2.145
CN_477984 2.822
CN_473981 13.005
CN_473982 1.908
CN_497980 2.368
CN_497981 1.115
CN_513369 5.865
CN_513370 2.470
CN_517762 5.299
CN_517763 1.313
CN_502615 5.766
CN_502613 2.421
CN_502614 5.829
CN_502616 28.016
CN_502842 3.340
CN_502843 2.053
CN_466171 1.161
CN_466172 1.710

Total number of rows: 1851810

Table truncated, full table size 32632 Kbytes.

Supplementary file Size Download File type/resource
GSM337651.CEL.gz 26.7 Mb (ftp)(http) CEL
Processed data included within Sample table

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