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Sample GSM3348118 Query DataSets for GSM3348118
Status Public on Feb 24, 2020
Title Sox9eGFP Low Male Rep #2
Sample type SRA
Source name Intestine
Organism Mus musculus
Characteristics tissue: small intestine
strain: C57BL/6J
gender: male
Extracted molecule total RNA
Extraction protocol Libraries were prepared according to the TriLink CleanTag Small RNA Library Preparation Kit protocol
Library strategy miRNA-Seq
Library source transcriptomic
Library selection size fractionation
Instrument model Illumina HiSeq 2500
Description Sox9eGFP Low sorted intestine crypt cells
Data processing Small RNA-seq samples were processed using miRquant2.0 ( using default settings
RNA-seq samples were aligned using STAR, quantified using Salmon, and normalized counts were determined using DESeq2
Genome_build: mm9 and dm3 for mouse and fruit fly small RNA-seq, mm10 for mouse RNA-seq
Supplementary_files_format_and_content: RPMMM and normalized counts files are comma separated value matrices containing the Reads Per Million miRs Mapped (RPMMM) or DESeq2 normalized counts for each of the samples, respectively.
Submission date Aug 20, 2018
Last update date Feb 24, 2020
Contact name Praveen Sethupathy
Organization name Cornell University
Lab Dr. Sethupathy Lab
Street address Cornell University College of Veterinary Medicine, Box 17
City Ithica
State/province NY
ZIP/Postal code 14853
Country USA
Platform ID GPL17021
Series (1)
GSE118814 MicroRNA-7 regulates the plasticity of the enteroendocrine lineage
BioSample SAMN09866514
SRA SRX4580927

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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