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Sample GSM3317648 Query DataSets for GSM3317648
Status Public on Dec 04, 2018
Title 0h Replicate 2
Sample type SRA
 
Source name 0h, HPAF-II xenograft - mouse pancreas
Organism Homo sapiens
Characteristics host: mouse
rin: 8.1
timepoint: 0h
cell type: HPAF-II
treatment: Veh
Treatment protocol Treatment with ETC-159 bid
Growth protocol HPAF-II cells injected into the mouse pancreas. Tumors were allowed to develop for 28 days before start of treatment
Extracted molecule polyA RNA
Extraction protocol RNAeasy kit (Qiagen)
Illumina TruSeq Stranded polyA enrichment
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 3000
 
Description Human graft / mouse host
Data processing adaptor trimming using Cutadapt
filtering using Xenome
alignment using STAR - hg38 Ensembl 79
quantification using STAR - hg38 Ensembl 79
Genome_build: hg38 / Ensembl 79
Supplementary_files_format_and_content: RSEM quantification of human reads
 
Submission date Aug 02, 2018
Last update date Dec 04, 2018
Contact name NATHAN HARMSTON
E-mail(s) harmstonn@cardiff.ac.uk
Organization name Cardiff University
Street address Museum Avenue
City Cardiff
ZIP/Postal code CF10 3AX
Country United Kingdom
 
Platform ID GPL21290
Series (1)
GSE118041 Transcriptional response to PORCN inhibition using an orthotopic model of RNF43 mutant pancreatic adenocarcinoma (HPAF-II)
Relations
SRA SRX3875391
BioSample SAMN08848830

Supplementary file Size Download File type/resource
GSM3317648_nph_Unt-3.genes.results.txt.gz 1.4 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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