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Sample GSM3308551 Query DataSets for GSM3308551
Status Public on Feb 11, 2019
Title NOD_16w_A
Sample type SRA
Source name Pancreatic islets
Organism Mus musculus
Characteristics age: 16 weeks
strain: NOD/ShiltJ
tissue: Pancreas
Extracted molecule total RNA
Extraction protocol islets were extracted, single cell suspension was made and CD45 cells were depleted.
scRNA libraries were prepared for sequencing using standard 10X Genomics protocol
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina NovaSeq 6000
Description NOD_16w_A
Data processing Cell Ranger v2.0.0
Genome_build: mm10
Supplementary_files_format_and_content: filtered gene barcode matrices from cellranger output: genes.tsv, barcodes.tsv, matrix.mtx (
Submission date Jul 27, 2018
Last update date Feb 13, 2019
Contact name Anil Bhushan
Organization name UCSF
Department Diabetes Center
Lab Bhushan Lab
Street address 513 Parnassus ave
City San Francisco
State/province CA
ZIP/Postal code 94143
Country USA
Platform ID GPL24247
Series (1)
GSE117770 Targeted elimination of senescent beta cells prevents Type 1 Diabetes
BioSample SAMN09726647
SRA SRX4475144

Supplementary file Size Download File type/resource
GSM3308551_NOD_16w_A_barcodes.tsv.gz 20.4 Kb (ftp)(http) TSV
GSM3308551_NOD_16w_A_genes.tsv.gz 212.7 Kb (ftp)(http) TSV
GSM3308551_NOD_16w_A_matrix.mtx.gz 34.5 Mb (ftp)(http) MTX
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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