|
|
GEO help: Mouse over screen elements for information. |
|
Status |
Public on Feb 11, 2019 |
Title |
NOD_08w_A |
Sample type |
SRA |
|
|
Source name |
Pancreatic islets
|
Organism |
Mus musculus |
Characteristics |
age: 8 weeks strain: NOD/ShiltJ tissue: Pancreas
|
Extracted molecule |
total RNA |
Extraction protocol |
islets were extracted, single cell suspension was made and CD45 cells were depleted. scRNA libraries were prepared for sequencing using standard 10X Genomics protocol
|
|
|
Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina NovaSeq 6000 |
|
|
Description |
NOD_08w_A
|
Data processing |
Cell Ranger v2.0.0 Genome_build: mm10 Supplementary_files_format_and_content: filtered gene barcode matrices from cellranger output: genes.tsv, barcodes.tsv, matrix.mtx (https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/2.0/output/overview)
|
|
|
Submission date |
Jul 27, 2018 |
Last update date |
Feb 13, 2019 |
Contact name |
Anil Bhushan |
Organization name |
UCSF
|
Department |
Diabetes Center
|
Lab |
Bhushan Lab
|
Street address |
513 Parnassus ave
|
City |
San Francisco |
State/province |
CA |
ZIP/Postal code |
94143 |
Country |
USA |
|
|
Platform ID |
GPL24247 |
Series (1) |
GSE117770 |
Targeted elimination of senescent beta cells prevents Type 1 Diabetes |
|
Relations |
BioSample |
SAMN09726644 |
SRA |
SRX4475138 |
Supplementary file |
Size |
Download |
File type/resource |
GSM3308545_NOD_08w_A_barcodes.tsv.gz |
12.6 Kb |
(ftp)(http) |
TSV |
GSM3308545_NOD_08w_A_genes.tsv.gz |
212.7 Kb |
(ftp)(http) |
TSV |
GSM3308545_NOD_08w_A_matrix.mtx.gz |
22.7 Mb |
(ftp)(http) |
MTX |
SRA Run Selector |
Raw data are available in SRA |
Processed data provided as supplementary file |
|
|
|
|
|