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GEO accession:
Sample GSM325321
Query DataSets for GSM325321
Status
Public on Apr 16, 2009
Title
Stomach
Sample type
RNA
Source name
Stomach tissue of frog
Organism
Xenopus tropicalis
Characteristics
Stomach
Extracted molecule
polyA RNA
Extraction protocol
mRNA extraction and cDNA synthesis were done as described by Zhang et al., 2004 (PMID: 15588312)
Label
Cy5 or Cy3
Label protocol
cDNA labelling procedures were done as described by Zhang et al., 2004 (PMID: 15588312)
Hybridization protocol
Hybridizations were carried out as described by Zhang et al., 2004 (PMID: 15588312)
Scan protocol
Arrays were scanned on an Axon 4000A scanner and images quatified using GenePix
Description
Stomach tissue of frog
Data processing
Data was processed as described by Zhang et al., 2004 (PMID: 15588312) and dye-swapped replicates were averaged.
Submission date
Sep 29, 2008
Last update date
Apr 16, 2009
Contact name
Esther T Chan
Organization name
Celgene Corporation
Street address
1500 Owens Street, Suite 500
City
San Francisco
State/province
California
ZIP/Postal code
94158
Country
USA
Platform ID
GPL7400
Series (1)
GSE12975
Expression of known and predicted genes in tissues of Xenopus tropicalis (frog)
Data table header descriptions
ID_REF
Unique identifier
VALUE
Arcsinh-transformed normalized intensity.
Data table
ID_REF
VALUE
EnsFrogProbe_1
5.693015
EnsFrogProbe_2
5.490747
EnsFrogProbe_3
5.557413
EnsFrogProbe_4
5.494403
EnsFrogProbe_5
5.268658
EnsFrogProbe_6
5.6902555
EnsFrogProbe_7
5.805357
EnsFrogProbe_8
3.8702035
EnsFrogProbe_9
3.5890195
EnsFrogProbe_10
4.007253
EnsFrogProbe_11
3.1736905
EnsFrogProbe_12
4.1419515
EnsFrogProbe_13
3.891673
EnsFrogProbe_14
3.7121205
EnsFrogProbe_15
3.345758
EnsFrogProbe_16
4.201018
EnsFrogProbe_17
4.2040175
EnsFrogProbe_18
5.603189
EnsFrogProbe_19
4.966932
EnsFrogProbe_20
6.012569
Total number of rows:
41523
Table truncated, full table size
1134 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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