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GEO accession:
Sample GSM325320
Query DataSets for GSM325320
Status
Public on Apr 16, 2009
Title
Spleen
Sample type
RNA
Source name
Spleen tissue of frog
Organism
Xenopus tropicalis
Characteristics
Spleen
Extracted molecule
polyA RNA
Extraction protocol
mRNA extraction and cDNA synthesis were done as described by Zhang et al., 2004 (PMID: 15588312)
Label
Cy5 or Cy3
Label protocol
cDNA labelling procedures were done as described by Zhang et al., 2004 (PMID: 15588312)
Hybridization protocol
Hybridizations were carried out as described by Zhang et al., 2004 (PMID: 15588312)
Scan protocol
Arrays were scanned on an Axon 4000A scanner and images quatified using GenePix
Description
Spleen tissue of frog
Data processing
Data was processed as described by Zhang et al., 2004 (PMID: 15588312) and dye-swapped replicates were averaged.
Submission date
Sep 29, 2008
Last update date
Apr 16, 2009
Contact name
Esther T Chan
Organization name
Celgene Corporation
Street address
1500 Owens Street, Suite 500
City
San Francisco
State/province
California
ZIP/Postal code
94158
Country
USA
Platform ID
GPL7400
Series (1)
GSE12975
Expression of known and predicted genes in tissues of Xenopus tropicalis (frog)
Data table header descriptions
ID_REF
Unique identifier
VALUE
Arcsinh-transformed normalized intensity.
Data table
ID_REF
VALUE
EnsFrogProbe_1
5.286335
EnsFrogProbe_2
5.3282085
EnsFrogProbe_3
5.373567
EnsFrogProbe_4
5.2800245
EnsFrogProbe_5
5.4317625
EnsFrogProbe_6
5.599482
EnsFrogProbe_7
5.3792425
EnsFrogProbe_8
4.310793
EnsFrogProbe_9
4.758413
EnsFrogProbe_10
4.593522
EnsFrogProbe_11
4.584234
EnsFrogProbe_12
4.427344
EnsFrogProbe_13
4.64934
EnsFrogProbe_14
4.752431
EnsFrogProbe_15
4.3671135
EnsFrogProbe_16
4.719373
EnsFrogProbe_17
4.538291
EnsFrogProbe_18
6.2813195
EnsFrogProbe_19
5.1090075
EnsFrogProbe_20
5.76897
Total number of rows:
41523
Table truncated, full table size
1133 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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