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GEO accession:
Sample GSM325317
Query DataSets for GSM325317
Status
Public on Apr 16, 2009
Title
Oviduct
Sample type
RNA
Source name
Oviduct tissue of frog
Organism
Xenopus tropicalis
Characteristics
Oviduct
Extracted molecule
polyA RNA
Extraction protocol
mRNA extraction and cDNA synthesis were done as described by Zhang et al., 2004 (PMID: 15588312)
Label
Cy5 or Cy3
Label protocol
cDNA labelling procedures were done as described by Zhang et al., 2004 (PMID: 15588312)
Hybridization protocol
Hybridizations were carried out as described by Zhang et al., 2004 (PMID: 15588312)
Scan protocol
Arrays were scanned on an Axon 4000A scanner and images quatified using GenePix
Description
Oviduct tissue of frog
Data processing
Data was processed as described by Zhang et al., 2004 (PMID: 15588312) and dye-swapped replicates were averaged.
Submission date
Sep 29, 2008
Last update date
Apr 16, 2009
Contact name
Esther T Chan
Organization name
Celgene Corporation
Street address
1500 Owens Street, Suite 500
City
San Francisco
State/province
California
ZIP/Postal code
94158
Country
USA
Platform ID
GPL7400
Series (1)
GSE12975
Expression of known and predicted genes in tissues of Xenopus tropicalis (frog)
Data table header descriptions
ID_REF
Unique identifier
VALUE
Arcsinh-transformed normalized intensity.
Data table
ID_REF
VALUE
EnsFrogProbe_1
5.6089965
EnsFrogProbe_2
5.832273
EnsFrogProbe_3
5.96076
EnsFrogProbe_4
5.719463
EnsFrogProbe_5
5.724278
EnsFrogProbe_6
5.967889
EnsFrogProbe_7
5.882107
EnsFrogProbe_8
4.638458
EnsFrogProbe_9
4.468393
EnsFrogProbe_10
4.4268775
EnsFrogProbe_11
3.7480225
EnsFrogProbe_12
4.37592
EnsFrogProbe_13
4.5827815
EnsFrogProbe_14
4.8553195
EnsFrogProbe_15
4.504101
EnsFrogProbe_16
4.4829775
EnsFrogProbe_17
4.4485265
EnsFrogProbe_18
5.7567185
EnsFrogProbe_19
5.0851265
EnsFrogProbe_20
5.7738425
Total number of rows:
41523
Table truncated, full table size
1134 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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