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GEO accession:
Sample GSM325316
Query DataSets for GSM325316
Status
Public on Apr 16, 2009
Title
Ovary
Sample type
RNA
Source name
Ovary tissue of frog
Organism
Xenopus tropicalis
Characteristics
Ovary
Extracted molecule
polyA RNA
Extraction protocol
mRNA extraction and cDNA synthesis were done as described by Zhang et al., 2004 (PMID: 15588312)
Label
Cy5 or Cy3
Label protocol
cDNA labelling procedures were done as described by Zhang et al., 2004 (PMID: 15588312)
Hybridization protocol
Hybridizations were carried out as described by Zhang et al., 2004 (PMID: 15588312)
Scan protocol
Arrays were scanned on an Axon 4000A scanner and images quatified using GenePix
Description
Ovary tissue of frog
Data processing
Data was processed as described by Zhang et al., 2004 (PMID: 15588312) and dye-swapped replicates were averaged.
Submission date
Sep 29, 2008
Last update date
Apr 16, 2009
Contact name
Esther T Chan
Organization name
Celgene Corporation
Street address
1500 Owens Street, Suite 500
City
San Francisco
State/province
California
ZIP/Postal code
94158
Country
USA
Platform ID
GPL7400
Series (1)
GSE12975
Expression of known and predicted genes in tissues of Xenopus tropicalis (frog)
Data table header descriptions
ID_REF
Unique identifier
VALUE
Arcsinh-transformed normalized intensity.
Data table
ID_REF
VALUE
EnsFrogProbe_1
6.2732705
EnsFrogProbe_2
6.0924135
EnsFrogProbe_3
6.55209
EnsFrogProbe_4
6.2217845
EnsFrogProbe_5
6.4182325
EnsFrogProbe_6
6.7045305
EnsFrogProbe_7
6.47333
EnsFrogProbe_8
3.7430815
EnsFrogProbe_9
4.145169
EnsFrogProbe_10
4.4024525
EnsFrogProbe_11
3.7336235
EnsFrogProbe_12
4.258494
EnsFrogProbe_13
4.0059335
EnsFrogProbe_14
4.3691605
EnsFrogProbe_15
4.2443595
EnsFrogProbe_16
4.14543
EnsFrogProbe_17
3.7976495
EnsFrogProbe_18
7.8466115
EnsFrogProbe_19
4.575453
EnsFrogProbe_20
4.9990415
Total number of rows:
41523
Table truncated, full table size
1133 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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