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GEO accession:
Sample GSM325315
Query DataSets for GSM325315
Status
Public on Apr 16, 2009
Title
Muscle
Sample type
RNA
Source name
Muscle tissue of frog
Organism
Xenopus tropicalis
Characteristics
Muscle
Extracted molecule
polyA RNA
Extraction protocol
mRNA extraction and cDNA synthesis were done as described by Zhang et al., 2004 (PMID: 15588312)
Label
Cy5 or Cy3
Label protocol
cDNA labelling procedures were done as described by Zhang et al., 2004 (PMID: 15588312)
Hybridization protocol
Hybridizations were carried out as described by Zhang et al., 2004 (PMID: 15588312)
Scan protocol
Arrays were scanned on an Axon 4000A scanner and images quatified using GenePix
Description
Muscle tissue of frog
Data processing
Data was processed as described by Zhang et al., 2004 (PMID: 15588312) and dye-swapped replicates were averaged.
Submission date
Sep 29, 2008
Last update date
Apr 16, 2009
Contact name
Esther T Chan
Organization name
Celgene Corporation
Street address
1500 Owens Street, Suite 500
City
San Francisco
State/province
California
ZIP/Postal code
94158
Country
USA
Platform ID
GPL7400
Series (1)
GSE12975
Expression of known and predicted genes in tissues of Xenopus tropicalis (frog)
Data table header descriptions
ID_REF
Unique identifier
VALUE
Arcsinh-transformed normalized intensity.
Data table
ID_REF
VALUE
EnsFrogProbe_1
5.954387
EnsFrogProbe_2
6.037123
EnsFrogProbe_3
6.058076
EnsFrogProbe_4
6.0088525
EnsFrogProbe_5
5.7842135
EnsFrogProbe_6
5.8543605
EnsFrogProbe_7
6.0055185
EnsFrogProbe_8
4.3976855
EnsFrogProbe_9
4.5966805
EnsFrogProbe_10
4.463338
EnsFrogProbe_11
3.6700015
EnsFrogProbe_12
4.208586
EnsFrogProbe_13
4.1372185
EnsFrogProbe_14
4.050836
EnsFrogProbe_15
4.282794
EnsFrogProbe_16
4.535674
EnsFrogProbe_17
3.8405515
EnsFrogProbe_18
5.435762
EnsFrogProbe_19
5.1903535
EnsFrogProbe_20
5.850056
Total number of rows:
41523
Table truncated, full table size
1134 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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