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GEO accession:
Sample GSM325313
Query DataSets for GSM325313
Status
Public on Apr 16, 2009
Title
Liver
Sample type
RNA
Source name
Liver tissue of frog
Organism
Xenopus tropicalis
Characteristics
Liver
Extracted molecule
polyA RNA
Extraction protocol
mRNA extraction and cDNA synthesis were done as described by Zhang et al., 2004 (PMID: 15588312)
Label
Cy5 or Cy3
Label protocol
cDNA labelling procedures were done as described by Zhang et al., 2004 (PMID: 15588312)
Hybridization protocol
Hybridizations were carried out as described by Zhang et al., 2004 (PMID: 15588312)
Scan protocol
Arrays were scanned on an Axon 4000A scanner and images quatified using GenePix
Description
Liver tissue of frog
Data processing
Data was processed as described by Zhang et al., 2004 (PMID: 15588312) and dye-swapped replicates were averaged.
Submission date
Sep 29, 2008
Last update date
Apr 16, 2009
Contact name
Esther T Chan
Organization name
Celgene Corporation
Street address
1500 Owens Street, Suite 500
City
San Francisco
State/province
California
ZIP/Postal code
94158
Country
USA
Platform ID
GPL7400
Series (1)
GSE12975
Expression of known and predicted genes in tissues of Xenopus tropicalis (frog)
Data table header descriptions
ID_REF
Unique identifier
VALUE
Arcsinh-transformed normalized intensity.
Data table
ID_REF
VALUE
EnsFrogProbe_1
5.7591125
EnsFrogProbe_2
6.1599565
EnsFrogProbe_3
6.1331945
EnsFrogProbe_4
5.884186
EnsFrogProbe_5
5.803485
EnsFrogProbe_6
6.0656245
EnsFrogProbe_7
5.7999185
EnsFrogProbe_8
3.927218
EnsFrogProbe_9
3.7127035
EnsFrogProbe_10
4.019154
EnsFrogProbe_11
3.8481545
EnsFrogProbe_12
4.1197595
EnsFrogProbe_13
4.032129
EnsFrogProbe_14
3.617406
EnsFrogProbe_15
3.6467955
EnsFrogProbe_16
3.8112495
EnsFrogProbe_17
4.031515
EnsFrogProbe_18
7.1168915
EnsFrogProbe_19
6.2474745
EnsFrogProbe_20
6.3254785
Total number of rows:
41523
Table truncated, full table size
1134 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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