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GEO accession:
Sample GSM325308
Query DataSets for GSM325308
Status
Public on Apr 16, 2009
Title
Femur
Sample type
RNA
Source name
Femur tissue of frog
Organism
Xenopus tropicalis
Characteristics
Femur
Extracted molecule
polyA RNA
Extraction protocol
mRNA extraction and cDNA synthesis were done as described by Zhang et al., 2004 (PMID: 15588312)
Label
Cy5 or Cy3
Label protocol
cDNA labelling procedures were done as described by Zhang et al., 2004 (PMID: 15588312)
Hybridization protocol
Hybridizations were carried out as described by Zhang et al., 2004 (PMID: 15588312)
Scan protocol
Arrays were scanned on an Axon 4000A scanner and images quatified using GenePix
Description
Femur tissue of frog
Data processing
Data was processed as described by Zhang et al., 2004 (PMID: 15588312) and dye-swapped replicates were averaged.
Submission date
Sep 29, 2008
Last update date
Apr 16, 2009
Contact name
Esther T Chan
Organization name
Celgene Corporation
Street address
1500 Owens Street, Suite 500
City
San Francisco
State/province
California
ZIP/Postal code
94158
Country
USA
Platform ID
GPL7400
Series (1)
GSE12975
Expression of known and predicted genes in tissues of Xenopus tropicalis (frog)
Data table header descriptions
ID_REF
Unique identifier
VALUE
Arcsinh-transformed normalized intensity.
Data table
ID_REF
VALUE
EnsFrogProbe_1
4.6548935
EnsFrogProbe_2
4.804904
EnsFrogProbe_3
5.05853
EnsFrogProbe_4
4.841302
EnsFrogProbe_5
4.6202625
EnsFrogProbe_6
5.071139
EnsFrogProbe_7
5.1031725
EnsFrogProbe_8
3.189565
EnsFrogProbe_9
3.3407325
EnsFrogProbe_10
3.6081085
EnsFrogProbe_11
3.1904175
EnsFrogProbe_12
2.9095345
EnsFrogProbe_13
4.072048
EnsFrogProbe_14
3.4910095
EnsFrogProbe_15
4.253232
EnsFrogProbe_16
3.823523
EnsFrogProbe_17
4.082215
EnsFrogProbe_18
9.743668
EnsFrogProbe_19
5.7357685
EnsFrogProbe_20
6.2534435
Total number of rows:
41523
Table truncated, full table size
1134 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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