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GEO accession:
Sample GSM325304
Query DataSets for GSM325304
Status
Public on Apr 16, 2009
Title
Cartilage
Sample type
RNA
Source name
Cartilage tissue of frog
Organism
Xenopus tropicalis
Characteristics
Cartilage
Extracted molecule
polyA RNA
Extraction protocol
mRNA extraction and cDNA synthesis were done as described by Zhang et al., 2004 (PMID: 15588312)
Label
Cy5 or Cy3
Label protocol
cDNA labelling procedures were done as described by Zhang et al., 2004 (PMID: 15588312)
Hybridization protocol
Hybridizations were carried out as described by Zhang et al., 2004 (PMID: 15588312)
Scan protocol
Arrays were scanned on an Axon 4000A scanner and images quatified using GenePix
Description
Cartilage tissue of frog
Data processing
Data was processed as described by Zhang et al., 2004 (PMID: 15588312) and dye-swapped replicates were averaged.
Submission date
Sep 29, 2008
Last update date
Apr 16, 2009
Contact name
Esther T Chan
Organization name
Celgene Corporation
Street address
1500 Owens Street, Suite 500
City
San Francisco
State/province
California
ZIP/Postal code
94158
Country
USA
Platform ID
GPL7400
Series (1)
GSE12975
Expression of known and predicted genes in tissues of Xenopus tropicalis (frog)
Data table header descriptions
ID_REF
Unique identifier
VALUE
Arcsinh-transformed normalized intensity.
Data table
ID_REF
VALUE
EnsFrogProbe_1
4.6883125
EnsFrogProbe_2
4.6608805
EnsFrogProbe_3
5.2181385
EnsFrogProbe_4
4.881101
EnsFrogProbe_5
4.8214675
EnsFrogProbe_6
5.220224
EnsFrogProbe_7
5.0344515
EnsFrogProbe_8
2.8955025
EnsFrogProbe_9
3.0157415
EnsFrogProbe_10
2.7860355
EnsFrogProbe_11
2.764219
EnsFrogProbe_12
3.543617
EnsFrogProbe_13
3.3529665
EnsFrogProbe_14
3.3367535
EnsFrogProbe_15
3.5238835
EnsFrogProbe_16
2.962291
EnsFrogProbe_17
3.9348805
EnsFrogProbe_18
9.7734385
EnsFrogProbe_19
5.192753
EnsFrogProbe_20
5.5385545
Total number of rows:
41523
Table truncated, full table size
1134 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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