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Sample GSM322734 Query DataSets for GSM322734
Status Public on Dec 04, 2008
Title PF382_DMSO_72hs
Sample type RNA
 
Source name PF382 T-ALL cell line
Organism Homo sapiens
Characteristics PF382 T-ALL cell line
Treatment protocol Cells were treated with vehicle only (DMSO)for 72 hs
Growth protocol Cells were cultured in RPMI 1640 media with 10% FBS, supplemented with pen/strep
Extracted molecule total RNA
Extraction protocol Ambion RNAqueous miniquit following standard procedures
Label biotin
Label protocol Affymetrix standard procedures
 
Hybridization protocol Affymetrix standard procedures
Scan protocol Affymetrix standard procedures
Description This sample was used as control sample in an experiment testing the effects of inhibition of NOTCH1 signaling using a gamma-secretase inhibitor (CompE)
Data processing MAS5.0
 
Submission date Sep 19, 2008
Last update date Dec 04, 2008
Contact name Adolfo A Ferrando
E-mail(s) af2196@columbia.edu
Phone 212-851-4611
Organization name Columbia University
Department Institute for Cancer Genetics
Street address 1130 St Nicholas Ave Irving Cancer Research Center 5-505A
City New York
State/province NY
ZIP/Postal code 10032
Country USA
 
Platform ID GPL571
Series (1)
GSE12868 ChIP-on-chip significance analysis reveals large-scale binding and regulation by human transcription factor oncogenes

Data table header descriptions
ID_REF
VALUE Expresion value
ABS_CALL Presence/Absence call
DETECTION P-VALUE Significance

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 324.234 P 0.000509415
AFFX-BioB-M_at 404.178 P 0.000146581
AFFX-BioB-3_at 240.859 P 0.000340305
AFFX-BioC-5_at 939.417 P 4.42873e-05
AFFX-BioC-3_at 894.711 P 5.16732e-05
AFFX-BioDn-5_at 1818.89 P 4.42873e-05
AFFX-BioDn-3_at 4329.32 P 4.42873e-05
AFFX-CreX-5_at 6694.82 P 4.42873e-05
AFFX-CreX-3_at 7473.06 P 4.42873e-05
AFFX-DapX-5_at 2.5099 A 0.814869
AFFX-DapX-M_at 4.22647 A 0.9273
AFFX-DapX-3_at 24.695 A 0.574038
AFFX-LysX-5_at 2.80119 A 0.645547
AFFX-LysX-M_at 9.38721 A 0.783476
AFFX-LysX-3_at 2.69184 A 0.672921
AFFX-PheX-5_at 2.39423 A 0.897835
AFFX-PheX-M_at 5.29162 A 0.737173
AFFX-PheX-3_at 26.7721 A 0.631562
AFFX-ThrX-5_at 3.00822 A 0.60308
AFFX-ThrX-M_at 17.8875 A 0.368438

Total number of rows: 22277

Table truncated, full table size 674 Kbytes.




Supplementary file Size Download File type/resource
GSM322734.CEL.gz 2.0 Mb (ftp)(http) CEL
GSM322734.CHP.gz 121.3 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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