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Sample GSM322733 Query DataSets for GSM322733
Status Public on Dec 04, 2008
Title P12-ICHIKAWA_DMSO_72hs
Sample type RNA
 
Source name P12-ICHIKAWA T-ALL cell line
Organism Homo sapiens
Characteristics P12-ICHIKAWA T-ALL cell line
Treatment protocol Cells were treated with vehicle only (DMSO)for 72 hs
Growth protocol Cells were cultured in RPMI 8402 media with 10% FBS, supplemented with pen/strep
Extracted molecule total RNA
Extraction protocol Ambion RNAqueous miniquit following standard procedures
Label biotin
Label protocol Affymetrix standard procedures
 
Hybridization protocol Affymetrix standard procedures
Scan protocol Affymetrix standard procedures
Description This sample was used as control sample in an experiment testing the effects of inhibition of NOTCH1 signaling using a gamma-secretase inhibitor (CompE)
Data processing MAS5.0
 
Submission date Sep 19, 2008
Last update date Dec 04, 2008
Contact name Adolfo A Ferrando
E-mail(s) af2196@columbia.edu
Phone 212-851-4611
Organization name Columbia University
Department Institute for Cancer Genetics
Street address 1130 St Nicholas Ave Irving Cancer Research Center 5-505A
City New York
State/province NY
ZIP/Postal code 10032
Country USA
 
Platform ID GPL571
Series (1)
GSE12868 ChIP-on-chip significance analysis reveals large-scale binding and regulation by human transcription factor oncogenes

Data table header descriptions
ID_REF
VALUE Expresion value
ABS_CALL Presence/Absence call
DETECTION P-VALUE Significance

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 173.862 P 0.000753643
AFFX-BioB-M_at 213.822 P 0.000972149
AFFX-BioB-3_at 114.351 P 0.0012475
AFFX-BioC-5_at 486.637 P 4.42873e-05
AFFX-BioC-3_at 481.563 P 4.42873e-05
AFFX-BioDn-5_at 1180.14 P 4.42873e-05
AFFX-BioDn-3_at 2115.82 P 4.42873e-05
AFFX-CreX-5_at 3956.88 P 4.42873e-05
AFFX-CreX-3_at 4149.81 P 4.42873e-05
AFFX-DapX-5_at 0.691114 A 0.804734
AFFX-DapX-M_at 1.42375 A 0.772364
AFFX-DapX-3_at 2.77323 A 0.891021
AFFX-LysX-5_at 8.3421 A 0.425962
AFFX-LysX-M_at 2.20491 A 0.794268
AFFX-LysX-3_at 7.02022 A 0.147939
AFFX-PheX-5_at 2.18833 A 0.749204
AFFX-PheX-M_at 1.95453 A 0.910522
AFFX-PheX-3_at 18.9992 A 0.313723
AFFX-ThrX-5_at 0.969678 A 0.883887
AFFX-ThrX-M_at 1.39524 A 0.916408

Total number of rows: 22277

Table truncated, full table size 676 Kbytes.




Supplementary file Size Download File type/resource
GSM322733.CEL.gz 2.2 Mb (ftp)(http) CEL
GSM322733.CHP.gz 120.8 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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