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Sample GSM322730 Query DataSets for GSM322730
Status Public on Dec 04, 2008
Title HPB-ALL_DMSO_72hs
Sample type RNA
 
Source name HPB-ALL T-ALL cell line
Organism Homo sapiens
Characteristics HPB-ALL_DMSO_72hs
Treatment protocol Cells were treated with vehicle only (DMSO)for 72 hs
Growth protocol Cells were cultured in RPMI 1640 media with 10% FBS, supplemented with pen/strep
Extracted molecule total RNA
Extraction protocol Ambion RNAqueous miniquit following standard procedures
Label biotin
Label protocol Affymetrix standard procedures
 
Hybridization protocol Affymetrix standard procedures
Scan protocol Affymetrix standard procedures
Description This sample was used as control sample in an experiment testing the effects of inhibition of NOTCH1 signaling using a gamma-secretase inhibitor (CompE)
Data processing MAS5.0
 
Submission date Sep 19, 2008
Last update date Dec 04, 2008
Contact name Adolfo A Ferrando
E-mail(s) af2196@columbia.edu
Phone 212-851-4611
Organization name Columbia University
Department Institute for Cancer Genetics
Street address 1130 St Nicholas Ave Irving Cancer Research Center 5-505A
City New York
State/province NY
ZIP/Postal code 10032
Country USA
 
Platform ID GPL571
Series (1)
GSE12868 ChIP-on-chip significance analysis reveals large-scale binding and regulation by human transcription factor oncogenes

Data table header descriptions
ID_REF
VALUE Expresion value
ABS_CALL Presence/Absence call
DETECTION P-VALUE Significance

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 159.494 P 0.000581214
AFFX-BioB-M_at 192.274 P 0.00010954
AFFX-BioB-3_at 107.279 P 0.00159257
AFFX-BioC-5_at 445.084 P 5.16732e-05
AFFX-BioC-3_at 413.095 P 4.42873e-05
AFFX-BioDn-5_at 1029.2 P 4.42873e-05
AFFX-BioDn-3_at 2063.09 P 4.42873e-05
AFFX-CreX-5_at 3596.23 P 4.42873e-05
AFFX-CreX-3_at 3789.03 P 4.42873e-05
AFFX-DapX-5_at 4.16879 A 0.814869
AFFX-DapX-M_at 7.67261 A 0.617401
AFFX-DapX-3_at 7.42493 A 0.250796
AFFX-LysX-5_at 5.56402 A 0.617401
AFFX-LysX-M_at 3.21934 A 0.672921
AFFX-LysX-3_at 6.06893 A 0.205732
AFFX-PheX-5_at 1.53174 A 0.937071
AFFX-PheX-M_at 1.95462 A 0.932322
AFFX-PheX-3_at 6.7217 A 0.455413
AFFX-ThrX-5_at 5.48205 A 0.51489
AFFX-ThrX-M_at 2.35993 A 0.824672

Total number of rows: 22277

Table truncated, full table size 677 Kbytes.




Supplementary file Size Download File type/resource
GSM322730.CEL.gz 2.2 Mb (ftp)(http) CEL
GSM322730.CHP.gz 120.6 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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