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Sample GSM322729 Query DataSets for GSM322729
Status Public on Dec 04, 2008
Title DND41_DMSO_72hs
Sample type RNA
 
Source name DND41 T-ALL cell line
Organism Homo sapiens
Characteristics DND41 T-ALL cell line
Treatment protocol Cells were treated with vehicle only (DMSO)for 72 hs
Growth protocol Cells were cultured in RPMI 1640 media with 10% FBS, supplemented with pen/strep
Extracted molecule total RNA
Extraction protocol Ambion RNAqueous miniquit following standard procedures
Label biotin
Label protocol Affymetrix standard procedures
 
Hybridization protocol Affymetrix standard procedures
Scan protocol Affymetrix standard procedures
Description This sample was used as control sample in an experiment testing the effects of inhibition of NOTCH1 signaling using a gamma-secretase inhibitor (CompE)
Data processing MAS5.0
 
Submission date Sep 19, 2008
Last update date Dec 04, 2008
Contact name Adolfo A Ferrando
E-mail(s) af2196@columbia.edu
Phone 212-851-4611
Organization name Columbia University
Department Institute for Cancer Genetics
Street address 1130 St Nicholas Ave Irving Cancer Research Center 5-505A
City New York
State/province NY
ZIP/Postal code 10032
Country USA
 
Platform ID GPL571
Series (1)
GSE12868 ChIP-on-chip significance analysis reveals large-scale binding and regulation by human transcription factor oncogenes

Data table header descriptions
ID_REF
VALUE Expresion value
ABS_CALL Presence/Absence call
DETECTION P-VALUE Significance

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 254.975 P 0.000662269
AFFX-BioB-M_at 337.333 P 6.02111e-05
AFFX-BioB-3_at 216.767 P 0.000856509
AFFX-BioC-5_at 900.055 P 4.42873e-05
AFFX-BioC-3_at 702.293 P 4.42873e-05
AFFX-BioDn-5_at 1943.05 P 4.42873e-05
AFFX-BioDn-3_at 3662.55 P 4.42873e-05
AFFX-CreX-5_at 6388.89 P 4.42873e-05
AFFX-CreX-3_at 7098.02 P 4.42873e-05
AFFX-DapX-5_at 6.15159 A 0.470241
AFFX-DapX-M_at 10.7488 A 0.659339
AFFX-DapX-3_at 9.0391 A 0.455413
AFFX-LysX-5_at 7.0843 A 0.108979
AFFX-LysX-M_at 3.63598 A 0.868639
AFFX-LysX-3_at 18.8829 A 0.123572
AFFX-PheX-5_at 1.21416 A 0.971543
AFFX-PheX-M_at 1.77528 A 0.941556
AFFX-PheX-3_at 18.1066 A 0.470241
AFFX-ThrX-5_at 1.75184 A 0.921998
AFFX-ThrX-M_at 2.24806 A 0.760937

Total number of rows: 22277

Table truncated, full table size 676 Kbytes.




Supplementary file Size Download File type/resource
GSM322729.CEL.gz 2.0 Mb (ftp)(http) CEL
GSM322729.CHP.gz 121.1 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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