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| Status |
Public on Sep 30, 2008 |
| Title |
small RNAs from adult female head |
| Sample type |
SRA |
| |
|
| Source name |
Drosophila melanogaster adult female head
|
| Organism |
Drosophila melanogaster |
| Characteristics |
adult female head
|
| Extracted molecule |
total RNA |
| Extraction protocol |
total RNA from adult female head, ~18-26nt RNAs isolated using PAGE, ligation to adapters requires 5' monophosphate and 3' OH
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| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
size fractionation |
| Instrument model |
Illumina Genome Analyzer |
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| Description |
Small RNA data.
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| Data processing |
raw sequences were clipped by 3' linker sequences recognition, and select clipped sequences longer than 18 nt
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| Submission date |
Sep 19, 2008 |
| Last update date |
May 15, 2019 |
| Contact name |
Nicolas Robine |
| E-mail(s) |
robinen@mskcc.org
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| Organization name |
Memorial Sloan Kettering Cancer Center
|
| Department |
Developmental Biology
|
| Lab |
Eric Lai
|
| Street address |
1275 York Avenue, Box 252
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| City |
New York |
| State/province |
NY |
| ZIP/Postal code |
10065 |
| Country |
USA |
| |
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| Platform ID |
GPL9058 |
| Series (1) |
| GSE12840 |
Drosophila melanogaster late embryo, larval, pupal and adult head small RNA libraries |
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| Relations |
| SRA |
SRX002671 |
| BioSample |
SAMN02195675 |
| Data table header descriptions |
| SEQUENCE |
|
| COUNT |
number of times small RNA was sequenced |
| Data table |
| SEQUENCE |
COUNT |
| GAAGCGCTTCAACGAGGCCCAGGA |
1 |
| ATGTAGGCACCATTCATTACTGTCGGCCCCATCCA |
1 |
| TGGGTTCGTTCCACAGAATTCGCA |
1 |
| TCGGTGGGCCTTTCGTCCGTTTCTGTAGGGTCGGTT |
1 |
| GCTAGAAACTCCTGATTGAC |
1 |
| GGACAACGTTCTCAACAATAGTCT |
1 |
| CTAAGTACTAGTGCCGCACGCGG |
1 |
| ACGTAGGCACCATCCATCGTCTGCCGCCTTCCTC |
1 |
| GGAGGGCGTCCAAGTTCGTGC |
1 |
| TACGAGTAGGATATCGATCTGGTGG |
1 |
| AGAGCCTCGCTCTTGGGTTCTTAAGAT |
1 |
| ATCCCCGGCATCTCCGCCA |
2 |
| TGCCTAACAACGTGTTGATAA |
1 |
| ATGTCCTTCTGGGTTATT |
1 |
| ACTCCAGGCAGCGTAGAGTT |
1 |
| GAAGGAGGTTACCCTTAA |
2 |
| TATCATAGATTCAGTAGTTAT |
1 |
| GCGTCGGTGGTGTAATGGCTGGGGGGGCCCTCCAC |
1 |
| AGGCACGCGGTGAATGCCCAGA |
1 |
| ACAATTCCCGGTATGGGGACCA |
1 |
Total number of rows: 327879
Table truncated, full table size 8966 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM322533.fa.gz |
27.9 Mb |
(ftp)(http) |
FA |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data included within Sample table |
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