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Sample GSM3221 Query DataSets for GSM3221
Status Public on Apr 15, 2004
Title jzo029-rp1-v5_u74av2-met
Sample type RNA
 
Source name retina
Organism Mus musculus
Extracted molecule total RNA
 
Description Mice used were in a mixed background between 129/SvEv and C57BL/6. They were wildtype littermates of Rp1-/- mice used in parallel experiments. At P18, mice were sacrificed, followed by removal of retinal. Each RNA sample included a pool of neural retinas from 3-4 mice. Retinas were all collected at 1-2 pm of the day.
 
Submission date Dec 16, 2002
Last update date Nov 02, 2016
Contact name Jiewu Liu
E-mail(s) jiewu.liu@gmail.com
Phone 901-495-3893
Organization name St. Jude Children's Research Hospital
Department Department of Developmental Neurobiology
Lab Jian Zuo's Lab
Street address 332 N. Lauderdale St.
City Memphis
State/province TN
ZIP/Postal code 38105
Country USA
 
Platform ID GPL81
Series (2)
GSE120 P18 wildtype
GSE128 Rp1 knockout mice retinal development

Data table header descriptions
ID_REF
Stat Pairs The number of probe pairs in the probe set.
Stat Pairs Used The number of probe pairs in the probe set used in the Detection call.
VALUE A quantitative measure of the relative abundance of a transcript.
ABS_CALL A qualitative measurement indicating if the transcript is detected (Present), not detected (Absent), or marginally detected (Marginal).
Detection p-value A p-value indicating the significance of the Detection call. A Detection p-value measures the probability the the discrimination scores of all probe pairs in the probe set are above a certain level (Tau), and that the target is likely to be Present.

Data table
ID_REF Stat Pairs Stat Pairs Used VALUE ABS_CALL Detection p-value
AFFX-MurIL2_at 20 20 27.3 A 0.868639
AFFX-MurIL10_at 20 20 18.8 A 0.724854
AFFX-MurIL4_at 20 20 2.5 A 0.749204
AFFX-MurFAS_at 20 20 100.5 A 0.139482
AFFX-BioB-5_at 20 20 1168.6 P 0.000297
AFFX-BioB-M_at 20 20 3276.7 P 0.000044
AFFX-BioB-3_at 20 20 1384.6 P 0.00006
AFFX-BioC-5_at 20 20 3507 P 0.000044
AFFX-BioC-3_at 20 20 2821.2 P 0.000044
AFFX-BioDn-5_at 20 20 4189.4 P 0.000052
AFFX-BioDn-3_at 20 20 18113.3 P 0.000052
AFFX-CreX-5_at 20 20 42302.6 P 0.000044
AFFX-CreX-3_at 20 20 54699.3 P 0.000044
AFFX-BioB-5_st 20 20 48.2 A 0.39692
AFFX-BioB-M_st 20 20 195 A 0.175328
AFFX-BioB-3_st 20 20 63.8 A 0.659339
AFFX-BioC-5_st 20 20 31.5 A 0.852061
AFFX-BioC-3_st 20 20 38.4 A 0.617401
AFFX-BioDn-5_st 20 20 318.4 A 0.095667
AFFX-BioDn-3_st 20 20 360.6 P 0.030976

Total number of rows: 12488

Table truncated, full table size 395 Kbytes.




Supplementary file Size Download File type/resource
GSM3221_jzo029-rp1-v5-u74av2.CEL.gz 2.7 Mb (ftp)(http) CEL

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