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Sample GSM3137035 Query DataSets for GSM3137035
Status Public on Jun 20, 2018
Title MBC43
Sample type genomic
Source name Breast
Organism Homo sapiens
Characteristics disease state: medullary breast carcinoma
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from frozen tumor samples using a standard phenol/chloroform procedure
Label biotin
Label protocol As per manufacturer (Affymetrix)
Hybridization protocol DNA was restriction digested, PCR amplified, fragmented, labeled and hybridized to each array according to the manufacturer's instructions.
Scan protocol GeneChips were scanned using the Affymetrix 7G Scanner GCS3000
Description Genome profinling data from MBC and non MBC BLC
Data processing CEL files were generated with Affymetrix Genechip Command Console 3.0.1 for SNP6 chips. Rawcopy (available at was used to estimate copy number and B-allele frequency
Submission date May 08, 2018
Last update date Jun 20, 2018
Contact name Cecile Laurent
Organization name Institut Curie
Street address 26 rue d'ulm
City Paris Cedex 05
ZIP/Postal code 75248
Country France
Platform ID GPL6801
Series (2)
GSE114183 Medullary breast carcinoma, a triple-negative breast cancer subtype associated with BRCAness.
GSE114269 Medullary breast carcinoma, a triple-negative breast cancer subtype associated with BCLG overexpression and BRCAness

Data table header descriptions
VALUE B-Allele Frequency (BAF)
LRR Log-R Ratio

Data table
CN_473963 -0.3638
CN_473964 0.014
CN_473965 0.1034
CN_477984 -0.0288
CN_473981 -0.0278
CN_473982 -0.5967
CN_497980 -0.8831
CN_497981 -0.6387
CN_513369 0.3165
CN_513370 -0.2498
CN_517762 -0.2202
CN_517763 -0.1883
CN_502615 0.8525
CN_502613 0.3039
CN_502614 -0.2152
CN_502616 0.3514
CN_502842 -0.3439
CN_502843 -0.1384
CN_466171 -0.2059
CN_466172 -0.429

Total number of rows: 1854055

Table truncated, full table size 40146 Kbytes.

Supplementary file Size Download File type/resource
GSM3137035_BC27_ADN0019_s1h1_snp6.CEL.gz 27.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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