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Sample GSM3137034 Query DataSets for GSM3137034
Status Public on Jun 20, 2018
Title MBC44
Sample type genomic
Source name Breast
Organism Homo sapiens
Characteristics disease state: medullary breast carcinoma
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from frozen tumor samples using a standard phenol/chloroform procedure
Label biotin
Label protocol As per manufacturer (Affymetrix)
Hybridization protocol DNA was restriction digested, PCR amplified, fragmented, labeled and hybridized to each array according to the manufacturer's instructions.
Scan protocol GeneChips were scanned using the Affymetrix 7G Scanner GCS3000
Description Genome profinling data from MBC and non MBC BLC
Data processing CEL files were generated with Affymetrix Genechip Command Console 3.0.1 for SNP6 chips. Rawcopy (available at was used to estimate copy number and B-allele frequency
Submission date May 08, 2018
Last update date Jun 20, 2018
Contact name Cecile Laurent
Organization name Institut Curie
Street address 26 rue d'ulm
City Paris Cedex 05
ZIP/Postal code 75248
Country France
Platform ID GPL6801
Series (2)
GSE114183 Medullary breast carcinoma, a triple-negative breast cancer subtype associated with BRCAness.
GSE114269 Medullary breast carcinoma, a triple-negative breast cancer subtype associated with BCLG overexpression and BRCAness

Data table header descriptions
VALUE B-Allele Frequency (BAF)
LRR Log-R Ratio

Data table
CN_473963 -0.2224
CN_473964 0.0167
CN_473965 0.3638
CN_477984 0.0798
CN_473981 0.4876
CN_473982 0.1967
CN_497980 -0.6725
CN_497981 -0.6852
CN_513369 -0.1434
CN_513370 -0.0674
CN_517762 0.7813
CN_517763 -0.1736
CN_502615 0.5361
CN_502613 0.4365
CN_502614 -0.3939
CN_502616 0.1841
CN_502842 -0.2464
CN_502843 -0.3089
CN_466171 -0.3318
CN_466172 -0.0209

Total number of rows: 1854055

Table truncated, full table size 40295 Kbytes.

Supplementary file Size Download File type/resource
GSM3137034_BC27_ADN0018_s1h1_snp6.CEL.gz 28.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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