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Sample GSM3137033 Query DataSets for GSM3137033
Status Public on Jun 20, 2018
Title MBC42
Sample type genomic
 
Source name Breast
Organism Homo sapiens
Characteristics disease state: medullary breast carcinoma
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from frozen tumor samples using a standard phenol/chloroform procedure
Label biotin
Label protocol As per manufacturer (Affymetrix)
 
Hybridization protocol DNA was restriction digested, PCR amplified, fragmented, labeled and hybridized to each array according to the manufacturer's instructions.
Scan protocol GeneChips were scanned using the Affymetrix 7G Scanner GCS3000
Description Genome profinling data from MBC and non MBC BLC
Data processing CEL files were generated with Affymetrix Genechip Command Console 3.0.1 for SNP6 chips. Rawcopy (available at http://rawcopy.org/) was used to estimate copy number and B-allele frequency
 
Submission date May 08, 2018
Last update date Jun 20, 2018
Contact name Cecile Laurent
E-mail(s) cecile.laurent@curie.fr
Organization name Institut Curie
Street address 26 rue d'ulm
City Paris Cedex 05
ZIP/Postal code 75248
Country France
 
Platform ID GPL6801
Series (2)
GSE114183 Medullary breast carcinoma, a triple-negative breast cancer subtype associated with BRCAness.
GSE114269 Medullary breast carcinoma, a triple-negative breast cancer subtype associated with BCLG overexpression and BRCAness

Data table header descriptions
ID_REF
VALUE B-Allele Frequency (BAF)
LRR Log-R Ratio

Data table
ID_REF VALUE LRR
CN_473963 -0.6231
CN_473964 -0.1267
CN_473965 -0.0415
CN_477984 -0.0781
CN_473981 -0.1502
CN_473982 0.0132
CN_497980 -0.9665
CN_497981 -0.5594
CN_513369 -0.8
CN_513370 -0.4392
CN_517762 -0.8748
CN_517763 -0.0809
CN_502615 -0.4047
CN_502613 0.1318
CN_502614 -0.9454
CN_502616 -1.0748
CN_502842 -0.3624
CN_502843 -0.7198
CN_466171 -0.2033
CN_466172 0.0491

Total number of rows: 1854055

Table truncated, full table size 40138 Kbytes.




Supplementary file Size Download File type/resource
GSM3137033_BC27_ADN0017_s1h1_snp6.CEL.gz 27.7 Mb (ftp)(http) CEL
Processed data included within Sample table

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