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Sample GSM3137024 Query DataSets for GSM3137024
Status Public on Jun 20, 2018
Title MBC06
Sample type genomic
Source name Breast
Organism Homo sapiens
Characteristics disease state: medullary breast carcinoma
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from frozen tumor samples using a standard phenol/chloroform procedure
Label biotin
Label protocol As per manufacturer (Affymetrix)
Hybridization protocol DNA was restriction digested, PCR amplified, fragmented, labeled and hybridized to each array according to the manufacturer's instructions.
Scan protocol GeneChips were scanned using the Affymetrix 7G Scanner GCS3000
Description Genome profinling data from MBC and non MBC BLC
Data processing CEL files were generated with Affymetrix Genechip Command Console 3.0.1 for SNP6 chips. Rawcopy (available at was used to estimate copy number and B-allele frequency
Submission date May 08, 2018
Last update date Jun 20, 2018
Contact name Cecile Laurent
Organization name Institut Curie
Street address 26 rue d'ulm
City Paris Cedex 05
ZIP/Postal code 75248
Country France
Platform ID GPL6801
Series (2)
GSE114183 Medullary breast carcinoma, a triple-negative breast cancer subtype associated with BRCAness.
GSE114269 Medullary breast carcinoma, a triple-negative breast cancer subtype associated with BCLG overexpression and BRCAness

Data table header descriptions
VALUE B-Allele Frequency (BAF)
LRR Log-R Ratio

Data table
CN_473963 -0.1276
CN_473964 0.2021
CN_473965 0.1118
CN_477984 -0.1206
CN_473981 0.0277
CN_473982 -0.1906
CN_497980 -0.4827
CN_497981 0.1276
CN_513369 0.2538
CN_513370 -0.0146
CN_517762 0.5446
CN_517763 -0.2204
CN_502615 0.5004
CN_502613 0.1722
CN_502614 -0.0597
CN_502616 0.3502
CN_502842 0.0805
CN_502843 -0.2219
CN_466171 -0.2134
CN_466172 -0.0561

Total number of rows: 1854055

Table truncated, full table size 39980 Kbytes.

Supplementary file Size Download File type/resource
GSM3137024_BC27_ADN0008_s1h1_snp6.CEL.gz 27.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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