GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM3137004 Query DataSets for GSM3137004
Status Public on Jun 20, 2018
Title BLC_63
Sample type genomic
Source name Breast
Organism Homo sapiens
Characteristics disease state: non medullary basal-like breast carcinoma
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from frozen tumor samples using a standard phenol/chloroform procedure
Label biotin
Label protocol As per manufacturer (Affymetrix)
Hybridization protocol DNA was restriction digested, PCR amplified, fragmented, labeled and hybridized to each array according to the manufacturer's instructions.
Scan protocol GeneChips were scanned using the Affymetrix 7G Scanner GCS3000
Description Genome profinling data from MBC and non MBC BLC
Data processing CEL files were generated with Affymetrix Genechip Command Console 3.0.1 for SNP6 chips. Rawcopy (available at was used to estimate copy number and B-allele frequency
Submission date May 08, 2018
Last update date Jun 20, 2018
Contact name Cecile Laurent
Organization name Institut Curie
Street address 26 rue d'ulm
City Paris Cedex 05
ZIP/Postal code 75248
Country France
Platform ID GPL6801
Series (2)
GSE114183 Medullary breast carcinoma, a triple-negative breast cancer subtype associated with BRCAness.
GSE114269 Medullary breast carcinoma, a triple-negative breast cancer subtype associated with BCLG overexpression and BRCAness

Data table header descriptions
VALUE B-Allele Frequency (BAF)
LRR Log-R Ratio

Data table
CN_473963 0.3215
CN_473964 0.128
CN_473965 0.0161
CN_477984 0.189
CN_473981 0.1233
CN_473982 0.2682
CN_497980 0.0277
CN_497981 -0.1964
CN_513369 -0.2039
CN_513370 -0.5094
CN_517762 -0.1335
CN_517763 -0.1126
CN_502615 -0.1811
CN_502613 -0.3327
CN_502614 -0.0376
CN_502616 -0.0278
CN_502842 0.0619
CN_502843 -0.5182
CN_466171 -0.1968
CN_466172 -0.5003

Total number of rows: 1854055

Table truncated, full table size 40124 Kbytes.

Supplementary file Size Download File type/resource
GSM3137004_BC16_ADN0161_s1h1_Snp6.CEL.gz 27.5 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap