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Sample GSM3137003 Query DataSets for GSM3137003
Status Public on Jun 20, 2018
Title BLC_62
Sample type genomic
Source name Breast
Organism Homo sapiens
Characteristics disease state: non medullary basal-like breast carcinoma
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from frozen tumor samples using a standard phenol/chloroform procedure
Label biotin
Label protocol As per manufacturer (Affymetrix)
Hybridization protocol DNA was restriction digested, PCR amplified, fragmented, labeled and hybridized to each array according to the manufacturer's instructions.
Scan protocol GeneChips were scanned using the Affymetrix 7G Scanner GCS3000
Description Genome profinling data from MBC and non MBC BLC
Data processing CEL files were generated with Affymetrix Genechip Command Console 3.0.1 for SNP6 chips. Rawcopy (available at was used to estimate copy number and B-allele frequency
Submission date May 08, 2018
Last update date Jun 20, 2018
Contact name Cecile Laurent
Organization name Institut Curie
Street address 26 rue d'ulm
City Paris Cedex 05
ZIP/Postal code 75248
Country France
Platform ID GPL6801
Series (2)
GSE114183 Medullary breast carcinoma, a triple-negative breast cancer subtype associated with BRCAness.
GSE114269 Medullary breast carcinoma, a triple-negative breast cancer subtype associated with BCLG overexpression and BRCAness

Data table header descriptions
VALUE B-Allele Frequency (BAF)
LRR Log-R Ratio

Data table
CN_473963 -0.1514
CN_473964 0.1724
CN_473965 0.1029
CN_477984 0.327
CN_473981 0.0678
CN_473982 -0.1446
CN_497980 -0.6353
CN_497981 -0.368
CN_513369 -0.9256
CN_513370 -0.3516
CN_517762 -0.7269
CN_517763 -0.1816
CN_502615 -0.4949
CN_502613 -0.401
CN_502614 -0.7049
CN_502616 -1.2273
CN_502842 -0.403
CN_502843 -0.3954
CN_466171 -0.2328
CN_466172 -0.1911

Total number of rows: 1854055

Table truncated, full table size 40073 Kbytes.

Supplementary file Size Download File type/resource
GSM3137003_BC16_ADN0158_s1h1_Snp6.CEL.gz 27.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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