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Sample GSM3136999 Query DataSets for GSM3136999
Status Public on Jun 20, 2018
Title BLC_56
Sample type genomic
Source name Breast
Organism Homo sapiens
Characteristics disease state: non medullary basal-like breast carcinoma
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from frozen tumor samples using a standard phenol/chloroform procedure
Label biotin
Label protocol As per manufacturer (Affymetrix)
Hybridization protocol DNA was restriction digested, PCR amplified, fragmented, labeled and hybridized to each array according to the manufacturer's instructions.
Scan protocol GeneChips were scanned using the Affymetrix 7G Scanner GCS3000
Description Genome profinling data from MBC and non MBC BLC
Data processing CEL files were generated with Affymetrix Genechip Command Console 3.0.1 for SNP6 chips. Rawcopy (available at was used to estimate copy number and B-allele frequency
Submission date May 08, 2018
Last update date Jun 20, 2018
Contact name Cecile Laurent
Organization name Institut Curie
Street address 26 rue d'ulm
City Paris Cedex 05
ZIP/Postal code 75248
Country France
Platform ID GPL6801
Series (2)
GSE114183 Medullary breast carcinoma, a triple-negative breast cancer subtype associated with BRCAness.
GSE114269 Medullary breast carcinoma, a triple-negative breast cancer subtype associated with BCLG overexpression and BRCAness

Data table header descriptions
VALUE B-Allele Frequency (BAF)
LRR Log-R Ratio

Data table
CN_473963 -0.4793
CN_473964 -0.3159
CN_473965 -0.4723
CN_477984 -0.3009
CN_473981 -0.3936
CN_473982 -0.4891
CN_497980 -0.0477
CN_497981 -0.042
CN_513369 0.0476
CN_513370 0.0732
CN_517762 -0.1151
CN_517763 -0.0043
CN_502615 -0.0764
CN_502613 -0.1259
CN_502614 0.3465
CN_502616 0.4279
CN_502842 0.0792
CN_502843 -0.0546
CN_466171 -0.1344
CN_466172 0.0011

Total number of rows: 1854055

Table truncated, full table size 40263 Kbytes.

Supplementary file Size Download File type/resource
GSM3136999_BC16_ADN0152_s1h1_Snp6.CEL.gz 29.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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