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Sample GSM3136992 Query DataSets for GSM3136992
Status Public on Jun 20, 2018
Title BLC_38
Sample type genomic
 
Source name Breast
Organism Homo sapiens
Characteristics disease state: non medullary basal-like breast carcinoma
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from frozen tumor samples using a standard phenol/chloroform procedure
Label biotin
Label protocol As per manufacturer (Affymetrix)
 
Hybridization protocol DNA was restriction digested, PCR amplified, fragmented, labeled and hybridized to each array according to the manufacturer's instructions.
Scan protocol GeneChips were scanned using the Affymetrix 7G Scanner GCS3000
Description Genome profinling data from MBC and non MBC BLC
Data processing CEL files were generated with Affymetrix Genechip Command Console 3.0.1 for SNP6 chips. Rawcopy (available at http://rawcopy.org/) was used to estimate copy number and B-allele frequency
 
Submission date May 08, 2018
Last update date Jun 20, 2018
Contact name Cecile Laurent
E-mail(s) cecile.laurent@curie.fr
Organization name Institut Curie
Street address 26 rue d'ulm
City Paris Cedex 05
ZIP/Postal code 75248
Country France
 
Platform ID GPL6801
Series (2)
GSE114183 Medullary breast carcinoma, a triple-negative breast cancer subtype associated with BRCAness.
GSE114269 Medullary breast carcinoma, a triple-negative breast cancer subtype associated with BCLG overexpression and BRCAness

Data table header descriptions
ID_REF
VALUE B-Allele Frequency (BAF)
LRR Log-R Ratio

Data table
ID_REF VALUE LRR
CN_473963 -0.3817
CN_473964 -0.0629
CN_473965 -0.1839
CN_477984 -0.0118
CN_473981 -0.8518
CN_473982 0.1892
CN_497980 -0.449
CN_497981 -0.156
CN_513369 -0.2415
CN_513370 -0.4973
CN_517762 -0.491
CN_517763 0.0225
CN_502615 -0.5157
CN_502613 -0.4887
CN_502614 -0.2409
CN_502616 -0.5172
CN_502842 -0.2034
CN_502843 -0.3543
CN_466171 -0.3374
CN_466172 -0.2324

Total number of rows: 1854055

Table truncated, full table size 40152 Kbytes.




Supplementary file Size Download File type/resource
GSM3136992_BC16_ADN0052_s1h1_Snp6.CEL.gz 28.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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