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Sample GSM3136989 Query DataSets for GSM3136989
Status Public on Jun 20, 2018
Title BLC_36
Sample type genomic
 
Source name Breast
Organism Homo sapiens
Characteristics disease state: non medullary basal-like breast carcinoma
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from frozen tumor samples using a standard phenol/chloroform procedure
Label biotin
Label protocol As per manufacturer (Affymetrix)
 
Hybridization protocol DNA was restriction digested, PCR amplified, fragmented, labeled and hybridized to each array according to the manufacturer's instructions.
Scan protocol GeneChips were scanned using the Affymetrix 7G Scanner GCS3000
Description Genome profinling data from MBC and non MBC BLC
Data processing CEL files were generated with Affymetrix Genechip Command Console 3.0.1 for SNP6 chips. Rawcopy (available at http://rawcopy.org/) was used to estimate copy number and B-allele frequency
 
Submission date May 08, 2018
Last update date Jun 20, 2018
Contact name Cecile Laurent
E-mail(s) cecile.laurent@curie.fr
Organization name Institut Curie
Street address 26 rue d'ulm
City Paris Cedex 05
ZIP/Postal code 75248
Country France
 
Platform ID GPL6801
Series (2)
GSE114183 Medullary breast carcinoma, a triple-negative breast cancer subtype associated with BRCAness.
GSE114269 Medullary breast carcinoma, a triple-negative breast cancer subtype associated with BCLG overexpression and BRCAness

Data table header descriptions
ID_REF
VALUE B-Allele Frequency (BAF)
LRR Log-R Ratio

Data table
ID_REF VALUE LRR
CN_473963 -0.2964
CN_473964 -0.2052
CN_473965 -0.1653
CN_477984 0.0697
CN_473981 -0.203
CN_473982 0.2311
CN_497980 -0.0323
CN_497981 -0.0161
CN_513369 -0.219
CN_513370 -0.1294
CN_517762 -0.3422
CN_517763 0.0107
CN_502615 -0.2502
CN_502613 -0.2556
CN_502614 -0.0404
CN_502616 0.1385
CN_502842 -0.181
CN_502843 0.0213
CN_466171 -0.1784
CN_466172 0.0188

Total number of rows: 1854055

Table truncated, full table size 40085 Kbytes.




Supplementary file Size Download File type/resource
GSM3136989_BC16_ADN0045_s1h1_Snp6.CEL.gz 28.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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