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Sample GSM3136982 Query DataSets for GSM3136982
Status Public on Jun 20, 2018
Title BLC_25
Sample type genomic
 
Source name Breast
Organism Homo sapiens
Characteristics disease state: non medullary basal-like breast carcinoma
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from frozen tumor samples using a standard phenol/chloroform procedure
Label biotin
Label protocol As per manufacturer (Affymetrix)
 
Hybridization protocol DNA was restriction digested, PCR amplified, fragmented, labeled and hybridized to each array according to the manufacturer's instructions.
Scan protocol GeneChips were scanned using the Affymetrix 7G Scanner GCS3000
Description Genome profinling data from MBC and non MBC BLC
Data processing CEL files were generated with Affymetrix Genechip Command Console 3.0.1 for SNP6 chips. Rawcopy (available at http://rawcopy.org/) was used to estimate copy number and B-allele frequency
 
Submission date May 08, 2018
Last update date Jun 20, 2018
Contact name Cecile Laurent
E-mail(s) cecile.laurent@curie.fr
Organization name Institut Curie
Street address 26 rue d'ulm
City Paris Cedex 05
ZIP/Postal code 75248
Country France
 
Platform ID GPL6801
Series (2)
GSE114183 Medullary breast carcinoma, a triple-negative breast cancer subtype associated with BRCAness.
GSE114269 Medullary breast carcinoma, a triple-negative breast cancer subtype associated with BCLG overexpression and BRCAness

Data table header descriptions
ID_REF
VALUE B-Allele Frequency (BAF)
LRR Log-R Ratio

Data table
ID_REF VALUE LRR
CN_473963 0.2706
CN_473964 -0.0029
CN_473965 -0.0941
CN_477984 0.2093
CN_473981 0.284
CN_473982 0.0287
CN_497980 0.0626
CN_497981 -0.3243
CN_513369 0.1515
CN_513370 -0.3432
CN_517762 -0.1592
CN_517763 -0.0786
CN_502615 -0.0282
CN_502613 -0.1432
CN_502614 0.2228
CN_502616 0.1807
CN_502842 0.1684
CN_502843 0.0444
CN_466171 -0.3269
CN_466172 -0.3688

Total number of rows: 1854055

Table truncated, full table size 40050 Kbytes.




Supplementary file Size Download File type/resource
GSM3136982_BC17_ADN0030_s1h1_Snp6.CEL.gz 28.8 Mb (ftp)(http) CEL
Processed data included within Sample table

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