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Sample GSM3070097 Query DataSets for GSM3070097
Status Public on Oct 10, 2018
Title LPS01
Sample type SRA
Source name Hippocampus_LPS
Organism Mus musculus
Characteristics strain: C57BL/6
age: post natal day 14
treated with: 10 mg/kg LPS (i.p. injection) for 2 hours
tissue: Hippocampus
Treatment protocol Mice were treated with saline or 10 mg/kg LPS for two hours.
Extracted molecule polyA RNA
Extraction protocol Single cells were captured and lysed on the 10x Chromium Controller instrument (10x Genomics).
Standard 10x Genomics scRNA-seq library construction protocol was used to construct the library
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina NovaSeq 6000
Data processing The sequencing data were was processed with the 10X Cell Ranger v2.1.
Genome_build: mm10
Supplementary_files_format_and_content:  csv files contain per-gene, per-cell expression and were created using cellranger mat2csv
Submission date Mar 28, 2018
Last update date Oct 12, 2018
Contact name Xiang Yu
Organization name Institute of Neuroscience, Chinese Academy of Sciences
Street address 320 Yue Yang Road
City Shanghai
ZIP/Postal code 200031
Country China
Platform ID GPL24247
Series (1)
GSE112436 PDGFRβ Cells Rapidly Relay Inflammatory Signal from the Circulatory System to Neurons via Chemokine CCL2
BioSample SAMN08804977
SRA SRX3856559

Supplementary file Size Download File type/resource
GSM3070097_LPS01.csv.gz 5.0 Mb (ftp)(http) CSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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