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Sample GSM303494 Query DataSets for GSM303494
Status Public on Nov 30, 2008
Title Ad-F7 transduction + IgG treatment in primary human macrophages (Experiment 2)
Sample type RNA
 
Source name Macrophages Ad-F7 + IgG
Organism Homo sapiens
Characteristics Human Macrophages transduced with adenoviral vector expression the active form of IRF-7 (IRF-7 D247-467; Ad-F7) and treatment of cells with control isotype (IgG). RNA collected at 24 hours.
Treatment protocol Transduction of primary human macrophages with Ad-F7 and treatment of cells with IgG
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy Plus extraction kit
Label Cy3
Label protocol Ambion, TotalPrep, for biotin labeling and illumina's protocol for Cy3 labeling.
 
Hybridization protocol From illumina
Scan protocol From illumina
Description See illumina's sample preparation
Data processing BeadStudio from illumina, J-Express from Molmine and R
 
Submission date Jul 03, 2008
Last update date Sep 24, 2008
Contact name Eduardo Hernandez
E-mail(s) camacho99@yahoo.com
Organization name Lady Davis Institute for Medical Research (JGH)
Department Molecular Oncology Group
Lab 526
Street address 3755 Cote-Sainte-Catherine Road
City Montreal
State/province Quebec
ZIP/Postal code H3T-1E2
Country Canada
 
Platform ID GPL6883
Series (2)
GSE12002 Transcriptional profiles of Ad-F7 transduced macrophages treated with anti-IFNAR2 antibody or control isotype (IgG)
GSE12120 Transcriptional re-programming of primary human macrophages by IRF-3 and IRF-7

Data table header descriptions
ID_REF
VALUE quantile normalized, average of 6 donors

Data table
ID_REF VALUE
ILMN_1809034 115.658
ILMN_1660305 294.0434
ILMN_1762337 42.26995
ILMN_2055271 49.88445
ILMN_1814316 39.53136
ILMN_2359168 43.25081
ILMN_1731507 35.81394
ILMN_1787689 45.09656
ILMN_1745607 1060.125
ILMN_2136495 37.44419
ILMN_1668111 35.1349
ILMN_2295559 42.60413
ILMN_1735045 51.15487
ILMN_1680754 50.4354
ILMN_2375184 41.56619
ILMN_1659452 53.1305
ILMN_1767388 46.18203
ILMN_1675204 33.93803
ILMN_1673870 41.0724
ILMN_1755321 76.62488

Total number of rows: 18629

Table truncated, full table size 398 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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