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Sample GSM302232 Query DataSets for GSM302232
Status Public on Oct 15, 2008
Title Angioimmunoblastic T-cell lymphoma patient (AITL2)
Sample type RNA
 
Channel 1
Source name Human Universal Reference Total RNA (Beckton Dickinson)
Organism Homo sapiens
Characteristics Human Universal Reference Total RNA
Biomaterial provider Beckton Dickinson
Extracted molecule total RNA
Extraction protocol N/A
Label Cy3
Label protocol Cy3-labeled cRNA was generated from 0.5 ug of total RNA according to the manufacturer's protocol (Agilent Technology).
 
Channel 2
Source name Total RNA from frozen lymph node tissue
Organism Homo sapiens
Characteristics Lymph node from angioimmunoblastic T-cell lymphoma patient (AITL2)
Extracted molecule total RNA
Extraction protocol Frozen lymphoma tissues were ground to powder and lysed in lysis buffer Trizol reagent (Invitrogen).
Label Cy5
Label protocol Cy5-labeled cRNA was generated from 0.5 ug of total RNA according to the manufacturer's protocol (Agilent Technology).
 
 
Hybridization protocol The probe consisted of a mixture of Cy5-labeled patient's cRNA and Cy3-labeled control cRNA was hybridized for 17 hours at 65C on the Agilent 44K human oligo microarray.
Scan protocol Hybridized array slides were scanned at 10-um resolution using an Agilent G2565BA fluorescence dual laser scanner for Cy3 and Cy5 excitation.
Description Gene expression data from lymphoma tissue of an angioimmunoblastic T-cell lymphoma patient
Data processing Image intensity data were recorded and transferred into text files using Feature Extraction software, version 9.1.
 
Submission date Jul 01, 2008
Last update date Oct 15, 2008
Contact name Kana Miyazaki
E-mail(s) k-myzk@clin.medic.mie-u.ac.jp
Phone 81-59-231-5418
Organization name Mie University
Department Department of Hematology and Oncology
Street address 2-174 Edobashi
City Tsu
State/province Mie
ZIP/Postal code 514-8507
Country Japan
 
Platform ID GPL4133
Series (1)
GSE11946 Gene expression profiling of peripheral T-cell lymphoma including gamma delta T-cell lymphoma

Data table header descriptions
ID_REF
VALUE linear-lowess normalized log10 ratio (Cy5 (channel2)/Cy3 (channel 1))
PValueLogRatio p-value of the log ratio as determined by Agilent error model

Data table
ID_REF VALUE PValueLogRatio
1 4.60E-02 4.55E-01
2 0.00E+00 1.00E+00
3 0.00E+00 1.00E+00
4 0.00E+00 1.00E+00
5 0.00E+00 1.00E+00
6 0.00E+00 1.00E+00
7 0.00E+00 1.00E+00
8 0.00E+00 1.00E+00
9 0.00E+00 1.00E+00
10 0.00E+00 1.00E+00
11 0.00E+00 1.00E+00
12 8.96E-01 5.36E-18
13 1.52E-01 3.20E-02
14 7.98E-01 1.06E-16
15 -9.33E-02 5.48E-01
16 5.02E-01 6.39E-11
17 -1.21E+00 7.78E-21
18 -1.83E-01 5.00E-03
19 -3.61E-02 5.57E-01
20 5.64E-01 9.45E-11

Total number of rows: 45015

Table truncated, full table size 1063 Kbytes.




Supplementary file Size Download File type/resource
GSM302232.txt.gz 787.6 Kb (ftp)(http) TXT
Processed data included within Sample table

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