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Sample GSM2947894 Query DataSets for GSM2947894
Status Public on Jan 26, 2018
Title SK-N-BE(2)_Normoxia_input
Sample type SRA
 
Source name SK-N-BE(2)
Organism Homo sapiens
Characteristics cell line: SK-N-BE(2)
treatment: 48 hours Normoxia
Treatment protocol 1% O2 (hypoxia) or 20% O2 (normoxia) for 48 hours
Growth protocol DMEM with 10% FBS
Extracted molecule genomic DNA
Extraction protocol hMe-SEAL followed previously described methods (Song et al., Nature Biotechnology, 2011)
Standard Illumina protocols
 
Library strategy OTHER
Library source genomic
Library selection other
Instrument model Illumina HiSeq 2500
 
Description hMe-SEAL
Data processing DNA reads were aligned using BWA aligner.
Peaks were called using MACS1.4
Genome_build: hg19
Supplementary_files_format_and_content: peak file
 
Submission date Jan 25, 2018
Last update date Jan 26, 2018
Contact name Christopher Mariani
E-mail(s) christopher.mariani@gmail.com
Organization name University of Chicago
Street address 900 E 57 St
City Chicago
State/province IL
ZIP/Postal code 60637
Country USA
 
Platform ID GPL16791
Series (1)
GSE55391 TET1-mediated hydroxymethylation facilitates hypoxic gene induction in neuroblastoma
Relations
BioSample SAMN08395447
SRA SRX3599597

Supplementary file Size Download File type/resource
GSM2947894_C02_PFPeaks_control_afterfiting_all.wig.gz 580.2 Mb (ftp)(http) WIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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