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Sample GSM2947893 Query DataSets for GSM2947893
Status Public on Jan 26, 2018
Title NBL-WN_input
Sample type SRA
Source name NBl-WN cells
Organism Homo sapiens
Characteristics cell line: NBL-WN
Treatment protocol 1% O2 (hypoxia) or 20% O2 (normoxia) for 48 hours
Growth protocol DMEM with 10% FBS
Extracted molecule genomic DNA
Extraction protocol hMe-SEAL followed previously described methods (Song et al., Nature Biotechnology, 2011)
Standard Illumina protocols
Library strategy OTHER
Library source genomic
Library selection other
Instrument model Illumina HiSeq 2500
Description input
Please note that the 'WCP_Peaks_control_afterfiting_all.wig.gz' and 'WHP_Peaks_control_afterfiting_all.wig.gz' files are the corresponding input files for the NBL-WN_Normoxia_hMe-SEAL (WCP_Peaks_treat_afterfiting_all.wig.gz) and NBL-WN_Hypoxia_hMe-SEAL (WHP_Peaks_treat_afterfiting_all.wig.gz) processed data, respectively.
Data processing DNA reads were aligned using BWA aligner.
Peaks were called using MACS1.4
Genome_build: hg19
Supplementary_files_format_and_content: wig file
Submission date Jan 25, 2018
Last update date Jan 26, 2018
Contact name Christopher Mariani
Organization name University of Chicago
Street address 900 E 57 St
City Chicago
State/province IL
ZIP/Postal code 60637
Country USA
Platform ID GPL16791
Series (1)
GSE55391 TET1-mediated hydroxymethylation facilitates hypoxic gene induction in neuroblastoma
BioSample SAMN08395448
SRA SRX3599596

Supplementary file Size Download File type/resource
GSM2947893_WCP_Peaks_control_afterfiting_all.wig.gz 548.9 Mb (ftp)(http) WIG
GSM2947893_WHP_Peaks_control_afterfiting_all.wig.gz 556.9 Mb (ftp)(http) WIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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