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Sample GSM29 Query DataSets for GSM29
Status Public on Jan 24, 2001
Title NHGRI_TD-1730
Sample type RNA
 
Channel 1
Source name melanoma, thyroid
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name NHGRI_Melanoma_Ref
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Biopsy location: thyroid
Patient sex: male
Patient age: 55
Passage number: biopsy
p16 mutation status: ND
Invasive ability: ND
Vasculogenic mimicry: ND
Gel contraction: ND
Cell motility: ND
Scratch wound (%): ND

See http://www.nhgri.nih.gov/DIR/Microarray/Nature_paper.pdf
and http://www.nhgri.nih.gov/DIR/Microarray/Melanoma_Supplement/index.html
 
Submission date Jan 08, 2001
Last update date May 27, 2005
Contact name Michael Bittner
E-mail(s) mbittner@nhgri.nih.gov
Phone 301-496-7980
Fax 301-402-3241
URL http://www.nhgri.nih.gov/Intramural_research/People/bittnerm.html
Organization name NHGRI, NIH
Department Cancer Genetics Branch
Street address
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL7
Series (1)
GSE1 NHGRI_Melanoma_class

Data table header descriptions
ID_REF
CH1_TARGET_TOP Sample 1 (Red Channel) target location in image - top
CH1_TARGET_LT Sample 1 (Red Channel) target location in image - left
CH1_TARGET_BOT Sample 1 (Red Channel) target location in image - bottom
CH1_TARGET_RT Sample 1 (Red Channel) target location in image - right
CH1_RAW Sample 1 (Red Channel) Total Intensity
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_AREA Sample 1 (Red Channel) Area
CH1_BKD_MEAN Sample 1 (Red Channel) Mean Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_TARGET_TOP Sample 2 (Green Channel) target location in image - top
CH2_TARGET_LT Sample 2 Green Channel) target location in image - left
CH2_TARGET_BOT Sample 2 Green Channel) target location in image - bottom
CH2_TARGET_RT Sample 2 Green Channel) target location in image - right
CH2_RAW Sample 2 Green Channel) Total Intensity
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH2_SD Sample 2 Green Channel) Standard Deviation
CH2_AREA Sample 2 Green Channel) Area
CH2_BKD_MEAN Sample 2 Green Channel) Mean Background Level
CH2_BKD_SD Sample 2 Green Channel) Background Standard Deviation
UNION_AREA Union Area
RATIO Raw Ratio
VALUE log ratio of PRE_VALUE
CONF_LEVEL Confidence Level - fixed at 99%
CONF_LOW Confidence Interval - Lower Bound - Raw Ratio
CONF_UP Confidence Interval - Upper Bound - Raw Ratio
NORM_FACTOR M-value
CV Coefficient of variance
PRE_VALUE Calibrated Ratio

Data table
ID_REF CH1_TARGET_TOP CH1_TARGET_LT CH1_TARGET_BOT CH1_TARGET_RT CH1_RAW CH1_MEAN CH1_SD CH1_AREA CH1_BKD_MEAN CH1_BKD_SD CH2_TARGET_TOP CH2_TARGET_LT CH2_TARGET_BOT CH2_TARGET_RT CH2_RAW CH1_MEAN CH2_SD CH2_AREA CH2_BKD_MEAN CH2_BKD_SD UNION_AREA RATIO VALUE CONF_LEVEL CONF_LOW CONF_UP NORM_FACTOR CV PRE_VALUE
1 124 160 142 178 847149 5680.3 1923.4 94 3527.8 463.0 124 160 142 178 1141542 7651.1 2977.2 86 4756.9 276.6 100 0.742 -0.2604283 99.000 0.559 3.265 1.351 0.210 0.549
2 142 160 160 178 1350752 7447.1 2657.5 119 3534.6 446.8 142 160 160 178 1221020 5158.8 2034.8 122 4768.2 278.4 131 1.444 0.0285713 99.000 0.559 3.265 1.351 0.210 1.068
3 160 160 178 178 1 1.0 0.0 0 3553.3 457.6 160 160 178 178 1 1.0 0.0 0 4825.7 301.0 0 1.000 -0.1307683 99.000 0.559 3.265 1.351 0.210 0.740
4 178 160 196 178 711017 2865.0 987.4 114 3658.1 496.2 178 160 196 178 641156 1036.5 449.8 83 4845.6 294.2 117 2.764 0.3109063 99.000 0.559 3.265 1.351 0.210 2.046
5 197 160 215 178 754671 2624.0 1019.8 109 3664.9 497.6 197 160 215 178 922008 2828.2 1143.0 120 4855.2 302.2 128 0.928 -0.1630433 99.000 0.559 3.265 1.351 0.210 0.687
6 215 160 233 178 513689 2173.9 579.0 96 3663.5 494.2 215 160 233 178 487992 695.8 363.3 24 4849.5 295.3 96 3.124 0.3639883 99.000 0.559 3.265 1.351 0.210 2.312
7 233 160 251 178 606420 1852.9 704.8 81 3660.0 500.8 233 160 251 178 707976 1584.2 489.5 115 4851.9 291.0 118 1.170 -0.0624823 99.000 0.559 3.265 1.351 0.210 0.866
8 251 160 269 178 1125662 5935.5 1908.8 120 3604.0 461.4 251 160 269 178 1659996 9196.2 3000.8 117 4871.6 302.1 126 0.645 -0.3205723 99.000 0.559 3.265 1.351 0.210 0.478
9 269 160 287 178 1173368 5944.0 1540.8 126 3595.6 474.6 269 160 287 178 1249607 5292.2 1320.1 123 4867.2 311.0 131 1.123 -0.0803993 99.000 0.559 3.265 1.351 0.210 0.831
10 288 160 306 178 2067383 14571.7 5519.7 117 3563.2 469.7 288 160 306 178 2107762 13658.2 6288.6 106 4831.0 296.6 122 1.067 -0.1023733 99.000 0.559 3.265 1.351 0.210 0.790
11 306 160 324 178 1024925 5912.3 2214.1 108 3577.7 483.7 306 160 324 178 1336969 7551.1 3170.1 110 4828.2 305.2 116 0.783 -0.2373213 99.000 0.559 3.265 1.351 0.210 0.579
12 324 160 342 178 3029680 21053.0 6919.1 130 3578.6 495.2 324 160 342 178 2631706 16556.3 6778.0 116 4839.7 328.3 131 1.272 -0.0264103 99.000 0.559 3.265 1.351 0.210 0.941
13 117 772 135 790 428712 1960.1 725.5 71 3607.5 479.4 117 772 135 790 472516 1396.1 681.5 63 4740.5 282.0 85 1.404 0.0166163 99.000 0.559 3.265 1.351 0.210 1.039
14 135 772 153 790 24892 1372.7 206.4 0 3605.7 479.6 135 772 153 790 29728 1193.3 167.1 13 4752.3 289.4 13 1.150 -0.0700703 99.000 0.559 3.265 1.351 0.210 0.851
15 153 772 171 790 778820 3752.6 1556.6 105 3594.7 473.9 153 772 171 790 1111163 5708.7 2465.4 102 4773.9 296.4 114 0.657 -0.3124713 99.000 0.559 3.265 1.351 0.210 0.487
16 171 772 189 790 609353 2412.8 1033.2 86 3620.4 493.2 171 772 189 790 1175010 6842.6 2491.9 102 4791.2 308.6 109 0.353 -0.5833593 99.000 0.559 3.265 1.351 0.210 0.261
17 190 772 208 790 437237 3076.9 1390.0 60 3649.9 504.6 190 772 208 790 429335 1796.4 761.0 64 4808.8 312.6 73 1.713 0.1031193 99.000 0.559 3.265 1.351 0.210 1.268
18 208 772 226 790 1972161 14258.1 4478.8 116 3670.6 507.5 208 772 226 790 2395788 16958.4 6607.6 106 4821.5 321.7 118 0.841 -0.2062103 99.000 0.559 3.265 1.351 0.210 0.622
19 226 772 244 790 447149 1845.8 711.4 68 3674.6 502.9 226 772 244 790 542575 1877.9 756.4 84 4820.6 319.0 89 0.983 -0.1384663 99.000 0.559 3.265 1.351 0.210 0.727
20 244 772 262 790 6426687 46136.6 18740.3 136 3682.7 514.2 244 772 262 790 4003532 26215.8 13539.4 114 4819.3 324.7 137 1.760 0.1149443 99.000 0.559 3.265 1.351 0.210 1.303

Total number of rows: 8192

Table truncated, full table size 1253 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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