|
| Status |
Public on Jan 01, 2018 |
| Title |
Kiwifruit_614-E21-II_good_1 |
| Sample type |
SRA |
| |
|
| Source name |
kiwifruit
|
| Organism |
Actinidia chinensis |
| Characteristics |
tissue: outer pericarp
developmental stage: 90 days after anthesis
cultivar: Hongyang
|
| Growth protocol |
grown under natural conditions
|
| Extracted molecule |
total RNA |
| Extraction protocol |
use the BIOFIT Reagent Kit
Illumina HiSeq 2000 sequencing platform following manufacture’s protocols
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 2000 |
| |
|
| Description |
All_gene_counts.list
|
| Data processing |
remove the 5' and 3' adaptor sequences
align to the Actinidia chinensis genome
Measurement of the FPKM value for each gene
Identification of differentially expressed genes by using the DESeq package
Genome_build: Actinidia chinensis genome (http://bdg.hfut.edu.cn/kir/index)
|
| |
|
| Submission date |
Dec 14, 2017 |
| Last update date |
Jan 01, 2018 |
| Contact name |
Junyang Yue |
| E-mail(s) |
aaran.yue@gmail.com
|
| Phone |
13855121023
|
| Organization name |
Hefei University of Technology
|
| Street address |
Tunxi Road
|
| City |
Hefei |
| State/province |
Anhui |
| ZIP/Postal code |
230009 |
| Country |
China |
| |
|
| Platform ID |
GPL24392 |
| Series (1) |
| GSE108099 |
Identification of MYB/bHLH proteins required for tissue-specific anthocyanin biosynthesis in inner pericarp of red-centered Actinidia chinensis cv. Hongyang |
|
| Relations |
| BioSample |
SAMN08178177 |
| SRA |
SRX3471964 |
