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Sample GSM2839464 Query DataSets for GSM2839464
Status Public on Nov 06, 2017
Title RO_Control_Rep4
Sample type SRA
 
Source name Intestinal organoid epithelial cells
Organism Mus musculus
Characteristics strain: C57BL/6
treatment: None
time point: N/A
genotype: Wild-type
Extracted molecule total RNA
Extraction protocol 3' polyA RNA seq
10X Genomics Chromium Prep
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina NextSeq 500
 
Data processing 3' polyA RNA-seq
CellRanger 1.0
PCA (prcomp in R)
kNN-based graph clustering (R code)
Genome_build: mm10
Supplementary_files_format_and_content: 3' polyA RNA-seq. The expression levels for each gene (rows) in each single cell (column) in UMI counts as calculated using the CellRanger pipeline. Each column header provides the sequencing batch id, the cell barcode, and the cell type as identified by cluster analysis. Each ID is seperated by '_'
 
Submission date Nov 03, 2017
Last update date May 15, 2019
Contact name Adam Haber
E-mail(s) ahaber@hsph.harvard.edu
Organization name Harvard T. H. Chan School of Public Health
Street address 665 Huntington Ave, HSPH Building 1, Room 305
City Boston
State/province Massachusetts
ZIP/Postal code 02115
Country USA
 
Platform ID GPL19057
Series (1)
GSE92332 A single-cell survey of the small intestinal epithelium
Relations
BioSample SAMN07976249
SRA SRX3361143

Supplementary file Size Download File type/resource
GSM2839464_RO_Control_Rep4_barcodes.tsv.gz 6.2 Kb (ftp)(http) TSV
GSM2839464_RO_Control_Rep4_genes.tsv.gz 211.0 Kb (ftp)(http) TSV
GSM2839464_RO_Control_Rep4_matrix.mtx.gz 8.1 Mb (ftp)(http) MTX
SRA Run SelectorHelp
Processed data provided as supplementary file
Processed data are available on Series record
Raw data are available in SRA

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