NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM283943 Query DataSets for GSM283943
Status Public on Nov 04, 2008
Title PPV deletion mutant-Arabidopsis protoplasts-12hpt-used as control rep 1
Sample type RNA
 
Source name Arabidopsis protoplasts transfected with PPV deletion mutant at 12 hpt; used as control
Organism Arabidopsis thaliana
Characteristics Arabidopsis protoplasts transfected with PPV deletion mutant at 12 hpt; used as control.
Biomaterial provider Arabidopsis Protoplasts
Treatment protocol Protoplasts transfected with PPV infection
Growth protocol Arabidopsis grown at standard green house conditions
Extracted molecule total RNA
Extraction protocol Trizol reagent to extract total RNA
Label Single color
Label protocol As per Affymetrix protocol
 
Hybridization protocol As per Affymetrix protocol
Scan protocol As per Affymetrix protocol
Description Labelling, hybridization, and detection of hybridization signals were performed as per Affymetrix standard protocol
Data processing Hybridization signals obtained from the scanned array images were quantified using MAS5.0 expression analysis algorithm, implemented in the Affymetrix GCOS (Gene Chip Operating) software version 1.2. Raw MAS5.0 data files obtained from scanned array images were imported into GeneSpring microarray analysis software version 7.3.1 (Silicon Genetics, Redwood City, CA, USA).
 
Submission date Apr 23, 2008
Last update date Nov 04, 2008
Contact name Mohan babu
E-mail(s) mohanbabu_r@yahoo.com
Phone 5194571470
Fax 5194573997
Organization name AAFC
Department Virology
Lab Molecular Virology
Street address 1391 Sandford
City London
State/province Ontario
ZIP/Postal code N5V 4T3
Country Canada
 
Platform ID GPL198
Series (1)
GSE11217 Altered gene expression changes in Arabidopsis leaf tissues and protoplasts in response to Plum pox virus infection

Data table header descriptions
ID_REF
VALUE 12h Control-protoplast-PPV deletion mutant infection

Data table
ID_REF VALUE
244901_at 30
244902_at 23.4
244903_at 33.2
244904_at 2.6
244905_at 6
244906_at 95.7
244907_at 5.8
244908_at 0.8
244909_at 13.9
244910_s_at 14.6
244911_at 2.8
244912_at 39.2
244913_at 2.3
244914_at 3.6
244915_s_at 1.3
244916_at 10.8
244917_at 2.3
244918_at 0.9
244919_at 8.9
244920_s_at 201.3

Total number of rows: 22808

Table truncated, full table size 330 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap