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Sample GSM280229

Query DataSets for GSM280229

Status

Public on Jun 10, 2008

Title

rdr2 inflorescence rep1 SBS

Sample type

SRA

Source name

inflorescence whole

Organism

Arabidopsis thaliana

Characteristics

floral tissue (up to stage 11/12)

Treatment protocol

tissues and cells were harvested on ice

Extracted molecule

total RNA

Extraction protocol

A conventional Trizol extraction was used for total RNA extraction, followed by oligo (dT) columns for polyA RNA extraction.

Label

N/A

Label protocol

N/A

Library strategy

OTHER

Library source

transcriptomic

Library selection

other

Instrument model

Illumina Genome Analyzer

Description

low molecular weight RNA used

Data processing

Raw abundances were normlazed according to the formula: normalized abundance (TP10M)= raw/(total genome match - (t/r/sn/snoRNA)*10,000,000.

Submission date

Apr 08, 2008

Last update date

May 15, 2019

Contact name

Marcelo Ariel German

E-mail(s)

mgerman@dbi.udel.edu

Organization name

Delaware Biotechnology Institute

Street address

15 Innovation Way

City

Newark

State/province

ZIP/Postal code

19711

Country

USA

Platform ID

GPL9062

Series (1)

GSE11094

Novel microRNA-target RNA pairs revealed by Parallel analysis of RNA ends

Relations

SRA

SRX003875

BioSample

SAMN02195361

Data table header descriptions
SEQUENCE
COUNT	normalized abundance

Data table
SEQUENCE	COUNT
AAAAAAAAAAAAAAAAAA	1
AAAAAAAAAAAAAAAAAAAAA	1
AAAAAAAAAAAAAAAAAAAAAAA	1
AAAAAAAAAAAAAAAAAAAAAAAACACTATGC	1
AAAAAAAAAAAAAAAAAAAAAAAACAGAATAG	1
AAAAAAAAAAAAAAAAAAAAAAAACAGACGGC	1
AAAAAAAAAAAAAAAAAAAAAAACAGAATCAC	1
AAAAAAAAAAAAAAAAAAAAAAACCAAATCCC	1
AAAAAAAAAAAAAAAAAAAAAAACCTACTGCC	1
AAAAAAAAAAAAAAAAAAAAAAACGCTTGCAG	1
AAAAAAAAAAAAAAAAAAAAAAAGAC	1
AAAAAAAAAAAAAAAAAAAAAAAGTAT	1
AAAAAAAAAAAAAAAAAAAAAACACATT	1
AAAAAAAAAAAAAAAAAAAAAACCCACTGCCG	1
AAAAAAAAAAAAAAAAAAAAAACCTATTCCC	1
AAAAAAAAAAAAAAAAAAAAAACTATTTGGAC	1
AAAAAAAAAAAAAAAAAAAAACACATGTCCCC	1
AAAAAAAAAAAAAAAAAAAAACGTATC	1
AAAAAAAAAAAAAAAAAAAACGCATGCCGCC	1
AAAAAAAAAAAAAAAAAAAACGGTGGC	1

Total number of rows: 943239

Table truncated, full table size 23989 Kbytes.

Supplementary file	Size	Download	File type/resource
GSM280229_s_1_sequencearab_rdr2.txt.gz	46.2 Mb	(ftp)(http)	TXT
SRA Run Selector
Processed data included within Sample table
Raw data are available in SRA