|
Status |
Public on Sep 29, 2017 |
Title |
Cordblood_highpregnancyanxiety_PELS_40 |
Sample type |
genomic |
|
|
Source name |
Cordblood_high pregnancy anxiety
|
Organism |
Homo sapiens |
Characteristics |
gender: Female pregnancy anxiety: high pregnancy anxiety tissue: cord blood
|
Extracted molecule |
genomic DNA |
Extraction protocol |
Cord blood DNA isolation
|
Label |
Cy3, Cy5
|
Label protocol |
Standard HM450 BeadChip protocol on bisulfite treated DNA
|
|
|
Hybridization protocol |
Standard HM450 BeadChip protocol on bisulfite treated DNA
|
Scan protocol |
Standard HM450 BeadChip protocol on bisulfite treated DNA
|
Data processing |
Raw data quality control and normalization were implemented using the wateRmelon package in R (Bioconductor). Probes with a detection p-value of more than 0.01 or a bead count of less than 3 in more than 5% of samples were removed. Additionally, cross-hybridizing probes, SNP probes and probes on the X or Y chromosomes were removed. The singal_intensities.txt contains unmethylated and methylated signal intensities.
|
|
|
Submission date |
Sep 28, 2017 |
Last update date |
Jan 23, 2018 |
Contact name |
Stephan Claes |
Organization name |
KU Leuven
|
Department |
Department of Neurosciences
|
Lab |
Research Group Psychiatry
|
Street address |
Herestraat 49
|
City |
Leuven |
ZIP/Postal code |
3000 |
Country |
Belgium |
|
|
Platform ID |
GPL13534 |
Series (1) |
|